Limosilactobacillus fermentum CECT 5716: LC40_0047
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Entry
LC40_0047 CDS
T01958
Name
(GenBank) Exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0047
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC40_0047
Archaeal homologous recombinant proteins
LC40_0047
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
CTNNBL
Motif
Other DBs
NCBI-ProteinID:
ADJ40723
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All DBs
Position
81448..82581
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AA seq
377 aa
AA seq
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MRFLHTADWHVGKKLNGFDLLAEQHDAFLKINQLAKDYKVDAVVVAGDLYDRSVPSEEAV
EELNKDLIQMNLKEGWPLLAVSGNHDSAVRLATGGDWFKATNFFMHTTVAQAIEEPVTLG
DTQFFLLPFFGLQEVRNYFGDPEIRDLKTAMARIVTKMEEEFDPDRAHVLVAHFFAAGSS
HTDSETQTEVGGLDAVPVDLMAPFDYVALGHLHNKNALQAPRVKYAGSPLKFSASEVNLD
KGVWIVDTQPFNLQWVPLEPLHDLVKLTGSFDELATVEYASHYQEDDFFVIELTDTAPIP
DLMNKLRHYYPKIIALSRVNKAADQSDLAAPAQDLENKDPLALLSDFYHQVTGEELSDNQ
RQWAKDALLAAQKEEEG
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttctacacactgccgattggcacgttggtaaaaagttgaatgggttcgattta
ctggccgaacagcacgacgccttcttaaaaattaatcaattagcaaaggattataaagtt
gatgccgtggtggtcgccggggacctttacgaccgctcagttccaagcgaagaggcggtc
gaagagttaaacaaagacttaattcaaatgaatcttaaggaaggttggccactcttggcg
gtctcgggcaaccacgattcggcggtccgtttagccaccgggggggactggtttaaggcg
accaacttctttatgcacaccacggtcgcccaggccatcgaagagccggtcaccctgggc
gatacccagttcttcttgctgcccttttttggcctccaggaggtacgtaattactttggt
gacccggagatcagggatttgaaaacggcaatggcccggatcgtgactaagatggaagaa
gaatttgacccggaccgcgcccacgtcttggtggcccacttctttgcggccggatccagc
cacaccgattcggaaacccaaaccgaggtggggggcctcgatgcggtaccggttgacctg
atggcaccctttgattacgtggcgttgggccacttgcacaataaaaacgcccttcaagca
ccgcgggttaagtacgccggatcaccgctcaagttttcggcgagcgaggtcaacctcgat
aagggcgtctggatcgttgacacccagccctttaaccttcagtgggtccccttagagccg
ctccacgacctagtgaagttaaccggctcctttgacgaactggcaacggtggagtacgcc
agccactaccaggaggacgacttttttgtgattgagttgaccgatacggcgccgatccca
gatttgatgaacaagctgcgccactactaccctaaaatcattgcccttagccgggtgaac
aaggccgctgaccagagtgatctagcggcgcccgcgcaggacttggaaaacaaggatccg
ctggccctgttgagtgacttttaccaccaggtgaccggcgaagagttaagcgataaccag
cgccaatgggctaaagacgccctactagcagcccaaaaggaggaggaaggatga
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