Leuconostoc garlicum: A9176_03550
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Entry
A9176_03550 CDS
T04802
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgc
Leuconostoc garlicum
Pathway
lgc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A9176_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgc03021
]
A9176_03550
03400 DNA repair and recombination proteins [BR:
lgc03400
]
A9176_03550
Enzymes [BR:
lgc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A9176_03550
Transcription machinery [BR:
lgc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A9176_03550
DNA repair and recombination proteins [BR:
lgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A9176_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AQN79486
LinkDB
All DBs
Position
682271..685933
Genome browser
AA seq
1220 aa
AA seq
DB search
MAIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYE
CACGKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLD
MSPRSLEEIIYFASYVVIEPGDAPVEKKQLLTEREYRELKREYGASFKAGMGAEAIKDLL
ASVDLAAEADQLKRELQEATGQKRVRAVRRLDIIEAFLQSENKPEWMVMDVIPVIPPDLR
PMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPR
PMAIELFRPFIMKELTTRKLAGNVKSAKRKIDKADEDVMDVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHI
LAPKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFSSVEEAKMAFASKVVHYHTRVGI
QTSSFPAEKPFTDEQRSKIMVTSVGKLLFNEILPVDFPYINEPSEENFKGVDDRFFIEAG
ENIHDYLAETPVVGSFKKGFLSDIIAEVYKRYKVTETSLLLDRMKDLGYEKSTESGLTVS
MTDVTELPDKPAILEDAHKQVATVTKQFRRGLITDDERYQRVIEIWTKAKDVIQEKLIAS
FEPTNPIFMMQDSGARGNISNFVQLAGMRGLMAGPGGKIIELPVTANFREGLTVMEMFIS
THGARKGMSDTALKTANSGYLTRRLVDVAQDVIVREWNNNSDRGVAVRAIMDGTSVVEPL
YDRILGRYAMKSVFDPETGEKIVARNEMIDEDIAKRIVAAGIEEVTIRSVFTSTTEHGVS
VLDYGRNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGNDITQGLPRVQE
IVEARIPKGRAEISEVTGTVVSIEENPAERTKAVTIEGETDTRTYTLPLAARMRFAEGDA
IKRGDAINEGPIDPKELLAVTDTLTTESYMLTEIQKVYRLQGIEVSDKHIEVMIRQMLRK
VRVMDPGETNLLPGMLMDIADFQRANEPALFAGQVPATARPVLLGITKAALETNSFLSAA
SFQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMAEYRKIKSKVVGDVIAQPDA
EADASADIPKLDDVAKSFDA
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcgatgttaacaagttcgagagcatgcaaatcggtttggcttcgcctgataag
atccgttcatggtcttatggtgaagtaaagaagccagaaacgatcaactatcgaacactt
aagccagaaaaagacggcttgttcgatgaacgcatcttcggacctacaaaggattatgaa
tgcgcctgcggtaagtacaagcgaatccgatataagggaattgtttgtgaccgctgtggt
gttgaagtgacatcatcaaaagttcgtcgtgaacgcatggggcacatcgaattagctgca
cctgttacacacatttggtacttcaaaggtatcccatcacgtatgggacttgtccttgac
atgtcaccacgttcacttgaagaaattatttactttgcgtcatatgttgtcattgaacct
ggtgatgcaccagttgaaaagaagcaattgttgactgaacgtgaataccgtgaattgaag
cgcgaatatggtgctagctttaaggctggcatgggtgctgaagcaattaaagatttgttg
gcaagcgttgatttggctgccgaagcagatcaattaaagcgtgaattacaagaagcaact
ggtcaaaagcgtgtacgtgccgtacgtcgtttggacattattgaagccttcttgcaatca
gaaaacaagcctgaatggatggtcatggatgttattccagttatcccaccagacttacga
ccaatggtgcaattggaaggtggccgttttgccacatctgatttgaacgatttgtaccgt
cgtgtcattaaccgtaacaaccgtttgaagcgtttgcttgatttgaatgccccaggcatc
attgtgcaaaacgaaaagcgtatgttgcaagaagccgtcgacgccttgattgataacggt
cgtcgtggccgtccagtggctggtcctggtaaccgaccattgaagtctttgtctcacatg
ttgaagggtaagcaaggtcgcttccgtcaaaacttgttgggtaagcgtgtcgactattca
ggtcgttcggttatcgatgttggaccattcttgaagatgaaccaaatgggcttgccacgt
ccaatggcgatcgaattgttccgcccattcatcatgaaggaattgacaacacgtaagtta
gccggtaacgtcaagtctgctaagcgtaagattgacaaggctgatgaagatgtgatggac
gtattggaagacgtgatcaaggaacacccagttcttttgaaccgcgcccctacgttgcac
cgtttgggaatccaagcctttgaacctgtgttggtttctggtaaggccatgcgtttgcat
ccattggttactgaagcctataacgccgatttcgatggtgatcagatggccattcacgtg
ccattgtctgatgaagcgcaagctgaagcacgtttgttgatgcttgccgcaggccacatt
ttggcaccaaaggatggaaagccaattgttgccccatctcaggatatggtgattggaaac
tactacttgacgactgaagaagctggtcgtgaaggtgaaggtatgattttctcttctgtt
gaagaagcaaaaatggcctttgcaagtaaggttgtccactatcatacacgtgtgggtatc
caaacatcatcattcccagcggaaaagccatttacggacgaacaacgttcaaagattatg
gtaacttctgttggtaagttgttgttcaacgaaattttgccagttgatttcccttatatt
aacgaaccatctgaagaaaacttcaagggtgttgatgaccgcttcttcattgaagctggt
gaaaacattcatgactacttggcggaaacaccagttgttggttccttcaagaagggcttc
ttgtcagacatcattgctgaagtctacaagcgttataaggtaacggaaacatcattgttg
ttggatcgcatgaaggatcttggttatgaaaagtcaacagaatcaggtttgactgtatct
atgactgatgtgactgaattgccagataagccagccatcttggaagatgcccataagcaa
gtcgcaactgtgacaaagcagttccgtcgtggtttgattacagatgacgaacgttaccaa
cgtgtcattgaaatctggactaaggctaaggatgttatccaagaaaagttgattgcttcc
ttcgaaccaaccaacccaatcttcatgatgcaggactcaggtgcgcgtggtaacatttct
aacttcgtgcagttggccggtatgcgtggtttgatggcgggtcctggtggtaagattatt
gaattgccagttacagcgaacttccgtgaaggtttgactgtgatggaaatgtttatttca
acccacggtgcccgtaagggaatgtcagatacggccttgaagacggccaactctggttac
ttgacacgtcgacttgtcgatgtggcgcaagacgttatcgtgcgtgaatggaacaacaat
tctgatcgtggtgtggctgttcgcgctatcatggacggcacatctgttgttgagccattg
tacgaccgtatcttgggtcgttatgccatgaagtcagtctttgatccagaaactggtgaa
aagattgttgcccgcaacgaaatgattgatgaagatatcgctaagcgtattgtggctgct
ggtatcgaagaagtgacaattcgttcagtctttacatcaacaactgaacacggtgtttct
gtgttggattatggtcgtaacttggcaactggtgaagaagttgaagtcggtgaagctgtt
ggaacagtggctgcccaatcaatcggtgaaccaggtacccaattgacgatgcgtaacttc
cacacgggtggtgttgctggtggaaacgatatcacacaaggtttgcctcgtgtgcaagaa
attgttgaagcacgtattcctaagggacgtgccgaaatttctgaagtgactggtacagtt
gtttcaatcgaagaaaatccagccgaacgtacaaaggctgtgacaatcgaaggtgaaaca
gacacacggacatacacattgccattggctgcacgtatgcgctttgctgaaggtgatgcc
attaagcgtggtgatgccattaacgaaggaccaatcgatccaaaggaattgttggctgta
acggatactttgacgactgaatcatacatgttaacggaaatccaaaaggtttaccgtttg
caaggtatcgaagtgtcagataagcatatcgaagtcatgatccgtcaaatgttgcgtaaa
gtacgtgtcatggatccaggtgaaacgaatcttttgccaggtatgttgatggatattgct
gatttccaacgcgccaacgaaccagccttgtttgctggtcaggtgccagcaacggcacgt
ccagtgttgcttggtattactaaggctgccttggaaacaaactcattcttgtctgccgca
tcattccaagaaacaacacgtgtcttgactgatgccgcaatccgcggaaagaacgatcca
ttggttggtttgaaagaaaacgttatcattggtaagattattcctgccggaacagggatg
gctgaatatcgtaagattaagagcaaggtggttggggatgtgattgcacaacctgacgct
gaagctgatgcatctgctgatattccaaagttagatgatgtggctaagtcatttgacgcc
taa
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