Lysobacter gummosus: LG3211_1394
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Entry
LG3211_1394 CDS
T04163
Name
(GenBank) alkA N-terminal domain protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LG3211_1394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgu03000
]
LG3211_1394
03400 DNA repair and recombination proteins [BR:
lgu03400
]
LG3211_1394
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LG3211_1394
Transcription factors [BR:
lgu03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LG3211_1394
DNA repair and recombination proteins [BR:
lgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LG3211_1394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
ALN90370
LinkDB
All DBs
Position
complement(1556702..1558294)
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AA seq
530 aa
AA seq
DB search
MDAIATPAPDASLPHWRVCEQARISRDPRFDGLFFTAVTSTGIYCRPVCPAPAAKRENVK
YFGHAAAAEAAGFRPCLRCRPELSPAEGAWRRGDAAVARALKLIDEGLLAEQPLAALAER
VGLGERQLRRLFVERLGAPPIGVHGTRRLLFAKQLLTETRLPITEVAMAAGFGSLRRFNT
TFREAYRMAPRDLRRRPNETPNGDGDSLVLRLGYRPPYDFTAMLDFLRGRALPGVEVVDE
HSYSRVIGPIESPGWLRVSAWPSDKRKAADDHPHALKLELHGPAPARLLEIINRLRRMFD
LDADPNAIATALSVDPRLKALFAKRPGLRLPSGWDGFEISVRAILGQQVSVAAARTLAAR
VAQRFGQALPKPFGPGLEHLFPTPEALADADLAEVGLTRARADTVRTVARALLEGRVDFR
AERTLDDFVARWVALPGIGPWTAHYVALRALGHPDAFPADDLVLQKAMPEDGVRMSAKAL
NARAEAWRPWRAYGVIQVWRDSMPVPIAKAAKPGDAPAGASAAKKSRKAA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggacgccatcgccactcccgcaccggacgcctcgctgccgcactggcgggtttgcgaa
caagcccgcatcagccgcgatccgcgtttcgacggtctgttcttcaccgccgtgaccagc
accggcatctattgccggccggtctgccccgctcccgcggccaagcgcgagaacgtcaag
tatttcggccacgccgccgcggccgaagccgccggtttccgcccctgcctgcgttgccgc
ccggagctgtccccggccgaaggcgcatggcgccgcggcgatgccgcggtcgcgcgcgcc
ttgaaactcatcgacgaaggcctgctcgccgagcaaccgctggcggcgctggccgagcgc
gtcggcctgggcgaacgccagttgcggcgtttgttcgtcgaacgcctgggcgctccgccg
atcggcgtgcacggcacgcgccggctgttgttcgccaagcaattgttgaccgaaacccgc
ttgccgatcaccgaagtcgcgatggccgccggtttcggcagcctgcgccgcttcaacacg
accttccgcgaggcctaccgcatggcgccgcgcgatctgcgccggcgcccgaacgaaacc
ccgaacggcgacggcgacagtctggtgctgcgcctgggttatcgcccgccgtacgatttc
accgcgatgctggatttcctgcgcgggcgcgccctgcccggcgttgaagtcgtcgacgaa
catagctacagccgcgtcatcggcccgatcgaatcgccaggctggctgcgcgtgagcgcg
tggcccagcgacaagcgcaaagccgccgacgaccacccgcacgcgctgaaactggaactg
cacggcccggcgccggcgcgtctgctggaaatcatcaatcgcctgcgccgcatgttcgac
ctggacgccgatccgaacgcgatcgccacggccctgtcggtcgatccgcgcctgaaggcc
ttgttcgcgaaacgtcccggattgcgtttgcccagcggttgggacggcttcgagatttcg
gtgcgggcgatcctcggccagcaggtcagcgtcgccgccgcgcgcaccttggccgcgcgc
gtggcgcagcgtttcggccaggccttgccgaagccgttcgggcccggactggagcatctg
ttcccaactcccgaagcgctggccgatgcggatctggccgaagtcggcctgacccgcgcg
cgcgccgacaccgtgcgcacggtcgcgcgcgccctgctcgaggggcgggtggatttccgc
gccgaacgcacgctcgacgatttcgtcgcgcgttgggtggccttgcccggcatcggccca
tggaccgcgcattacgtcgccctgcgcgcgctcggccatcccgatgccttcccggccgac
gatctggtgctgcaaaaggccatgcccgaggacggcgtgcgcatgagcgcgaaggcgctc
aacgcgcgcgccgaagcgtggcggccgtggcgcgcctacggagtgatccaggtctggcgc
gacagcatgccggtgcctatcgccaaagccgccaagccgggcgacgcgccagccggcgcg
agcgcggcgaagaaatcgaggaaagccgcatga
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