Lysobacter gummosus: LG3211_3349
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Entry
LG3211_3349 CDS
T04163
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
lgu
Lysobacter gummosus
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_3349 (cafA)
03009 Ribosome biogenesis [BR:
lgu03009
]
LG3211_3349 (cafA)
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG3211_3349 (cafA)
Ribosome biogenesis [BR:
lgu03009
]
Prokaryotic type
rRNA processing factors
LG3211_3349 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALN92303
LinkDB
All DBs
Position
complement(3721037..3722524)
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AA seq
495 aa
AA seq
DB search
MTEEILVNVTPRETRVAVVENGMLQELHIERGWRRGVVGNIYKGRVQRVMPGMQAAFVEI
GLERAAFLHAADIVKPNQSNEGEGDEAPLPPTPTRPIAELLREGQEIVVQVVKDPIGSKG
ARLTTQLSIPSRYLVLLPRTRVVGVSARIEDEGERARLKSLVTTLAPAGDNHGYIVRTNA
EGQPEEALAEDIGYLSRAWALIAEKSGTSKVGERVYEDLSLPLRAVRDLIRRDVEKVKVD
SRETCERLRSFAAQYMPGLAEKIEHYTGARPIFDLYGVEDEIQRALEKEVPLKSGGYLVI
DQTEAMTTIDVNTGSFLGQRNLEETVYRTNLEAAQSVARQLRLRNLGGIIIIDFIDMTDV
EHRRQVLRQLEKALTRDHAKTTVYEFSPLGLVEMTRKRTTESLERQLSEACHECGGRGTL
KTPETVTYEIFRDIVRQVRQFDAARLLVIASPKVVARITDEESAAVAELEEFLGKSIRFQ
ADDQYAQEQFDVVLL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaaatcctggtcaacgttactccgcgcgaaacccgcgtcgccgtggtcgaa
aacggcatgctgcaggaactgcacatcgaacgcggctggcgccgcggcgtggtcggcaac
atctacaagggccgggtgcaacgggtcatgccgggcatgcaggcggcgttcgtcgagatc
ggcctggagcgcgccgcgttcctgcacgcggccgacatcgtcaagcccaaccagagcaat
gaaggcgagggcgacgaagcgccgctgccgccgacgccgacccggccgatcgccgagttg
ctgcgcgagggccaggaaatcgtggtccaggtggtcaaggacccgatcggcagcaagggc
gcgcgcctgactacccagctcagcatcccctcgcgttacctggtgctgctgccgcgcacg
cgcgtggtcggggtgtcggcgcggatcgaggacgaaggcgagcgcgcgcggctgaaatcg
ctggtgaccaccctggcgccggccggcgacaaccacggctacatcgtgcgcaccaatgcc
gagggccagccggaggaagcgctggcggaagacatcggttacctgagccgggcctgggcg
ctgatcgcggaaaagtccggaacctcgaaggtcggcgagcgggtctacgaagacctgagc
ctgccgctgcgcgcggtgcgcgacctgatccgccgcgacgtggagaaggtcaaggtcgat
tcgcgcgaaacctgcgagcgcctgcgcagcttcgccgcgcaatacatgcccggccttgcg
gagaagatcgagcactacaccggcgcgcggccgatcttcgatctgtatggggtcgaggac
gagatccagcgcgcgctggagaaggaagtcccgctcaagtccggcggctatctggtcatc
gaccagaccgaagcgatgaccaccatcgacgtcaacaccggttccttcctgggtcaacgc
aatctggaggaaaccgtttaccgcaccaatctggaggcggcgcagtcggtcgcccggcag
ctgcggctgcgcaacctgggcgggatcatcatcatcgacttcatcgacatgaccgacgtg
gagcaccgccgtcaggtgctgcggcagttggagaaggcactcacgcgcgaccacgccaag
accacggtctacgagttctcgccgctgggcctggtcgagatgacccgcaagcgcaccacc
gagagtctggaacgccagctcagcgaggcctgccacgaatgcggcgggcgcggcaccttg
aagacgccggagacggtgacgtacgaaatcttccgcgacatcgtgcggcaggtgcgccag
ttcgacgcggcgcggctgctggtgatcgcctcgccgaaagtggtcgcgcgcatcaccgac
gaagagtcggcggcggtggccgagctggaggaattcctcggcaagtcgatccgtttccag
gccgacgatcagtatgcgcaggagcagttcgatgttgtattgctctga
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