KEGG   Lactobacillus helveticus KLDS1.8701: HUO_03455
Entry
HUO_03455         CDS       T03777                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lhd  Lactobacillus helveticus KLDS1.8701
Pathway
lhd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lhd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HUO_03455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lhd03019]
    HUO_03455
   03016 Transfer RNA biogenesis [BR:lhd03016]
    HUO_03455
Enzymes [BR:lhd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HUO_03455
Messenger RNA biogenesis [BR:lhd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HUO_03455
Transfer RNA biogenesis [BR:lhd03016]
 Prokaryotic type
  tRNA degradation factors
   HUO_03455
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 BRINP GRP
Other DBs
NCBI-ProteinID: AJY61038
LinkDB
Position
649198..651537
AA seq 779 aa
MAQNEKILAGVLEIFRHNPQKQFRVDQIEREARHERLGNFTELIKALSFLEHANKIITDG
KGEYQLAQANTIVEGIFKANDKGFGFVKLDDENVDDVFIAADYTKYAVDGDRVKVKIVAD
GNPWNGKGPEGRIEEILERGLESLVGEFHPLTDEQRKISPFIGYALSNNKKLHKYRVYLT
ENGLIPQMGDMVRVSIKDYPEEDYPESMTGAVTKIIGNKNDPGVDIMSIVSAHDVRTDWP
EDAMAQANAIPDHVTEEEKKGRVDITDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH
IADVSHYVKENTPLNEEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDME
ITPEGKRVGYKIYPSVMRSHGRMTYNKVNKTLRGEMDGLEDKYVKLRPMLEEMADLHAIL
YKQRHKRGAIDFEAPEAKIIVDDQGKPTDIVLHERGTAEKMIESFMLMANETVAEDFFRK
HVPFLYRVHETPDAERIKSFFEFCSAFGLNIHADPENIKPLDLQKVVSKTTGTPEEAVVQ
MMMLRSLKQAHYSEDALGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHAYQENGTTEDVQK
HFASYLPDVAEQTSAQERRSIDTERGVNDLKMTEYMADQVGQHFDAVVSSVTSFGMFIQL
PNTVEGLVHISNLTDDFYSFNEKSLTLTGRGTHKQYKIGMPIKVTLINANVEQHQLDFEV
YDPNAPKKKHNDRGMNNRRHGNLGFHNNRGHRGGGNYNSRGNRCNHGQGNRRNQRNFKH
NT seq 2340 nt   +upstreamnt  +downstreamnt
atggcacaaaacgaaaaaattttggccggtgttttagaaatttttcgccataatccacaa
aaacaatttcgcgtagatcaaattgaacgagaagcgcgtcatgaaagattgggtaatttt
acagaattaattaaggctctttctttcttagaacatgcaaataaaattattactgatggc
aagggagaatatcaattggctcaagccaacacaattgttgaaggtatctttaaggctaat
gacaagggctttggttttgtaaagttagacgatgaaaatgttgatgatgtttttatcgca
gctgattataccaagtatgccgttgatggtgacagagtaaaggtaaagatcgtagctgac
ggtaatccttggaatggcaaagggccagaaggtcgaatcgaagagatcctagaacgcggt
cttgaaagcttagtcggtgaatttcacccattaactgatgaacaaagaaaaatcagtcct
tttatcggctacgctttgagcaataacaagaaattgcataaataccgtgtctatttgact
gaaaatggacttattccacaaatgggagacatggtaagggtatctatcaaggattatcct
gaagaagattatcctgaatcaatgactggtgcagttactaagatcattggtaacaagaat
gatccaggcgttgatattatgtcaattgtttctgcccatgatgttcgtactgattggcca
gaagatgcaatggctcaagcaaatgcaattcctgatcatgttactgaagaagaaaagaag
ggcagagttgatattactgatcaacctgcagtaaccattgatggggatgattctaaggac
tttgacgatgccgttgttttatggaaattacctaatggaaattatcatttaggtgttcac
attgcggatgtatcacactatgtaaaagaaaatacgcctttaaatgaagaagcatttgct
cgtggcaatagtacatacttggtagaccgagttattccaatgttgccatttagactttca
aatggtatttgttcattaaatgagggcgtagaccgtcttgttttgtcctgtgatatggaa
attacaccagagggtaagagagtaggctacaagatttatccttctgttatgcgctcacac
ggccgtatgacttataacaaggttaacaagactcttaggggcgagatggatggtctagaa
gacaagtatgtaaaattacgtccaatgcttgaagaaatggccgatttgcatgctatttta
tacaagcaacggcataagcgcggtgcaattgactttgaagcacctgaggcaaaaattatt
gtcgatgatcaaggtaagccaactgacatcgttttgcatgaacgtggtactgccgaaaag
atgattgaatcatttatgctgatggctaatgaaactgttgctgaagatttctttagaaag
cacgttccatttttgtatcgtgttcacgaaactccagatgctgaaagaattaagagcttc
tttgaattctgtagtgcatttggcttaaatattcatgctgatccagaaaacattaagcca
cttgatttacaaaaagttgtatctaagactacaggtacaccagaagaagctgtagttcaa
atgatgatgctgcgcagtttaaagcaagcacattattctgaagatgcattaggacacttt
ggtttagccgctaaatactatactcactttacttcaccaattagacgttattccgatttg
atggttcatagaatgattcatgcatatcaagaaaacgggactactgaagatgtgcaaaaa
cattttgctagttatttgccagatgttgctgaacaaacttctgcccaagaacgtcgttca
attgatactgaacgtggagtaaatgacttgaagatgactgaatacatggcagaccaagtt
ggtcaacattttgatgccgtagtttcatcagtcactagttttggtatgttcattcaattg
cctaataccgttgaaggattagtgcacatctctaatttaactgatgacttctatagcttt
aatgaaaaatcattaacgttaactggtcgtggtacgcacaagcaatataagatagggatg
cctattaaagttaccttgattaatgcgaatgttgaacagcatcaattagactttgaagtc
tatgatcctaatgcgcctaagaagaagcataatgatcgaggaatgaacaatcgtcgtcac
ggcaatcttggattccacaataatcgtgggcaccgcggtggcggtaattataatagtcgt
ggcaatcgctgcaatcacggtcaaggaaatagaagaaatcaaagaaactttaagcattag

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