Lactobacillus helveticus KLDS1.8701: HUO_03455
Help
Entry
HUO_03455 CDS
T03777
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lhd
Lactobacillus helveticus KLDS1.8701
Pathway
lhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUO_03455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhd03019
]
HUO_03455
03016 Transfer RNA biogenesis [BR:
lhd03016
]
HUO_03455
Enzymes [BR:
lhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUO_03455
Messenger RNA biogenesis [BR:
lhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUO_03455
Transfer RNA biogenesis [BR:
lhd03016
]
Prokaryotic type
tRNA degradation factors
HUO_03455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
BRINP
GRP
Motif
Other DBs
NCBI-ProteinID:
AJY61038
LinkDB
All DBs
Position
649198..651537
Genome browser
AA seq
779 aa
AA seq
DB search
MAQNEKILAGVLEIFRHNPQKQFRVDQIEREARHERLGNFTELIKALSFLEHANKIITDG
KGEYQLAQANTIVEGIFKANDKGFGFVKLDDENVDDVFIAADYTKYAVDGDRVKVKIVAD
GNPWNGKGPEGRIEEILERGLESLVGEFHPLTDEQRKISPFIGYALSNNKKLHKYRVYLT
ENGLIPQMGDMVRVSIKDYPEEDYPESMTGAVTKIIGNKNDPGVDIMSIVSAHDVRTDWP
EDAMAQANAIPDHVTEEEKKGRVDITDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH
IADVSHYVKENTPLNEEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDME
ITPEGKRVGYKIYPSVMRSHGRMTYNKVNKTLRGEMDGLEDKYVKLRPMLEEMADLHAIL
YKQRHKRGAIDFEAPEAKIIVDDQGKPTDIVLHERGTAEKMIESFMLMANETVAEDFFRK
HVPFLYRVHETPDAERIKSFFEFCSAFGLNIHADPENIKPLDLQKVVSKTTGTPEEAVVQ
MMMLRSLKQAHYSEDALGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHAYQENGTTEDVQK
HFASYLPDVAEQTSAQERRSIDTERGVNDLKMTEYMADQVGQHFDAVVSSVTSFGMFIQL
PNTVEGLVHISNLTDDFYSFNEKSLTLTGRGTHKQYKIGMPIKVTLINANVEQHQLDFEV
YDPNAPKKKHNDRGMNNRRHGNLGFHNNRGHRGGGNYNSRGNRCNHGQGNRRNQRNFKH
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaacgaaaaaattttggccggtgttttagaaatttttcgccataatccacaa
aaacaatttcgcgtagatcaaattgaacgagaagcgcgtcatgaaagattgggtaatttt
acagaattaattaaggctctttctttcttagaacatgcaaataaaattattactgatggc
aagggagaatatcaattggctcaagccaacacaattgttgaaggtatctttaaggctaat
gacaagggctttggttttgtaaagttagacgatgaaaatgttgatgatgtttttatcgca
gctgattataccaagtatgccgttgatggtgacagagtaaaggtaaagatcgtagctgac
ggtaatccttggaatggcaaagggccagaaggtcgaatcgaagagatcctagaacgcggt
cttgaaagcttagtcggtgaatttcacccattaactgatgaacaaagaaaaatcagtcct
tttatcggctacgctttgagcaataacaagaaattgcataaataccgtgtctatttgact
gaaaatggacttattccacaaatgggagacatggtaagggtatctatcaaggattatcct
gaagaagattatcctgaatcaatgactggtgcagttactaagatcattggtaacaagaat
gatccaggcgttgatattatgtcaattgtttctgcccatgatgttcgtactgattggcca
gaagatgcaatggctcaagcaaatgcaattcctgatcatgttactgaagaagaaaagaag
ggcagagttgatattactgatcaacctgcagtaaccattgatggggatgattctaaggac
tttgacgatgccgttgttttatggaaattacctaatggaaattatcatttaggtgttcac
attgcggatgtatcacactatgtaaaagaaaatacgcctttaaatgaagaagcatttgct
cgtggcaatagtacatacttggtagaccgagttattccaatgttgccatttagactttca
aatggtatttgttcattaaatgagggcgtagaccgtcttgttttgtcctgtgatatggaa
attacaccagagggtaagagagtaggctacaagatttatccttctgttatgcgctcacac
ggccgtatgacttataacaaggttaacaagactcttaggggcgagatggatggtctagaa
gacaagtatgtaaaattacgtccaatgcttgaagaaatggccgatttgcatgctatttta
tacaagcaacggcataagcgcggtgcaattgactttgaagcacctgaggcaaaaattatt
gtcgatgatcaaggtaagccaactgacatcgttttgcatgaacgtggtactgccgaaaag
atgattgaatcatttatgctgatggctaatgaaactgttgctgaagatttctttagaaag
cacgttccatttttgtatcgtgttcacgaaactccagatgctgaaagaattaagagcttc
tttgaattctgtagtgcatttggcttaaatattcatgctgatccagaaaacattaagcca
cttgatttacaaaaagttgtatctaagactacaggtacaccagaagaagctgtagttcaa
atgatgatgctgcgcagtttaaagcaagcacattattctgaagatgcattaggacacttt
ggtttagccgctaaatactatactcactttacttcaccaattagacgttattccgatttg
atggttcatagaatgattcatgcatatcaagaaaacgggactactgaagatgtgcaaaaa
cattttgctagttatttgccagatgttgctgaacaaacttctgcccaagaacgtcgttca
attgatactgaacgtggagtaaatgacttgaagatgactgaatacatggcagaccaagtt
ggtcaacattttgatgccgtagtttcatcagtcactagttttggtatgttcattcaattg
cctaataccgttgaaggattagtgcacatctctaatttaactgatgacttctatagcttt
aatgaaaaatcattaacgttaactggtcgtggtacgcacaagcaatataagatagggatg
cctattaaagttaccttgattaatgcgaatgttgaacagcatcaattagactttgaagtc
tatgatcctaatgcgcctaagaagaagcataatgatcgaggaatgaacaatcgtcgtcac
ggcaatcttggattccacaataatcgtgggcaccgcggtggcggtaattataatagtcgt
ggcaatcgctgcaatcacggtcaaggaaatagaagaaatcaaagaaactttaagcattag
DBGET
integrated database retrieval system