Lactobacillus helveticus DPC 4571: lhv_1098
Help
Entry
lhv_1098 CDS
T00625
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhe
Lactobacillus helveticus DPC 4571
Pathway
lhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lhv_1098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhe03019
]
lhv_1098
03400 DNA repair and recombination proteins [BR:
lhe03400
]
lhv_1098
Enzymes [BR:
lhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lhv_1098
Messenger RNA biogenesis [BR:
lhe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lhv_1098
DNA repair and recombination proteins [BR:
lhe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
lhv_1098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
SecA_DEAD
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABX27155
UniProt:
A8YV67
LinkDB
All DBs
Position
1079069..1080868
Genome browser
AA seq
599 aa
AA seq
DB search
MFHIKLGKFMNPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPA
LMNEGVTLVISPLISLMKDQIDSLKQNGINAAALNSTTLQEEVNPILRQAYEGKIKLIYI
TPERLAMDYFRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSKPTILAL
TATATPAVQDDIGQQLNIPQENFIITSFARPNISFKVVNSPQNTHLYIAQYIKAHPDDAG
IIYTNTRKKVESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGMG
IDKSNVRFVVHASSARNIESYYQEAGRAGRDGEESEAVMIYHPGDLHQYRYFIEESDADQ
KYKELQYQKLQAITDYVNTGECLQQFIVRYFGQDCPPCGKCSNCLNQGDLKDITTDAQKV
IALVYELDGRFGKNIVAQCLVGSTSQRMQEIHADQYEHFNSLKISQKEAVSLIDYLIASG
YLKIEGIKYPLVHVTNRGWDVLDGKATVKRRISKIQKRKQSFAQDADTNLFKALREKRKE
LAKKQRVPAFMIFSDRSLHDMTKIKPQNENDFLEVSGVGQAKLKKYGQIMLKVIEKFTN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtttcatattaagttaggaaaatttatgaatccagaaaaaattttaaagcaaactttt
ggctattctagttttcgtccaggtcaaaagaaagtaattgatttaattttaaatagaaaa
aacgttttagctgttatgccaacaggtgcaggtaaatctctctgttatcaggttccggct
ttaatgaatgaaggcgtgacgttagtcatttcacctttgatatcgttaatgaaagatcaa
attgattcgctaaagcaaaatggtattaacgcagcggcgttaaactcaaccactctgcaa
gaagaagtaaatcctattttacgacaagcatatgaaggtaaaatcaagttgatctatatc
acgcctgagcgtttagcaatggactattttagatatcagcttaattttttagatgtcgat
ttggttgcagtggacgaagcacactgtatttcgcagtggggacatgattttcgtccagcg
tatagacaaatttttgaaggaattaattctcttaagagcaaacctaccatcttagcatta
acggcaactgctacaccggcagttcaagatgatattgggcagcaattaaatattccacaa
gagaacttcattattacttcatttgcacgcccaaatataagctttaaggtggttaactct
ccgcaaaatacccatctttatattgcacaatatattaaggcccatccagatgatgccgga
attatttatacgaatacccgtaagaaagttgaatctttaactgactatcttgctaaaaaa
ggtatttcagtaggtgcttatcatggaggaatggatgcaaaagaaagatcacaaatccaa
gaagcattccaattcgatgaatttcaagtgattgtagcaacgaacgcttttggcatggga
attgataaaagcaatgtccgttttgtagttcatgcatcgagtgctcgtaatattgaaagc
tattatcaagaagctggtcgtgccggtcgtgatggtgaagagagtgaagcggtgatgatt
taccatccaggagatcttcaccagtatcgctactttattgaagaatcggatgcagatcaa
aaatataaggaattgcaatatcaaaaattgcaggcgattactgattatgtaaacactggt
gaatgcttgcagcaatttatagtgcgctattttggtcaggactgtccgccttgtggtaaa
tgttcaaattgtcttaatcaaggtgatttaaaagatataactactgatgcacagaaggtt
atcgcgctggtctatgaacttgatggccgttttggtaaaaatattgtagcgcaatgtcta
gtgggttcgactagtcagcgaatgcaggaaatacatgcagaccaatatgaacattttaat
agtttaaaaatcagccagaaggaagccgtaagcttgattgactatttaattgcttctggt
tacttgaaaattgaagggattaaataccctttagttcacgtaaccaatcggggatgggat
gtcctagatggaaaagccacagtaaaaagaagaattagtaaaattcaaaagagaaagcaa
agttttgcccaagatgcagatactaatttattcaaagctttaagggaaaagcgcaaagaa
ctggctaagaagcaaagagttcctgcctttatgattttttctgatcgtagtttgcatgat
atgactaaaattaagccgcaaaatgaaaatgatttcttagaagtaagtggcgtgggacaa
gctaaattgaaaaagtacggtcaaatcatgcttaaagtaattgaaaaatttacaaattaa
DBGET
integrated database retrieval system
