Companilactobacillus heilongjiangensis: JP39_04275
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Entry
JP39_04275 CDS
T04057
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JP39_04275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhi03400
]
JP39_04275
DNA repair and recombination proteins [BR:
lhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JP39_04275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JP39_04275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_21
UvrA_DNA-bind
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_15
AAA_23
AAA_16
RsgA_GTPase
AAA_25
cobW
nSTAND3
PRK
DUF463
NACHT
AAA_33
YobI-ATPase
Cytidylate_kin
AAA_28
NRDD
Motif
Other DBs
NCBI-ProteinID:
ALB28636
UniProt:
A0A0K2LBG2
LinkDB
All DBs
Position
935709..938246
Genome browser
AA seq
845 aa
AA seq
DB search
MPEKNTKANQIEVHGGKVHNLKNIDVNIPLDKFVAISGPSGSGKSSLAMGILYAEGSRRY
LEALSTYTRRRISQNKRSQVQEVKHIPSAIALRQRPNVPSERSTVGSMSELFNVVRLIFS
RLGSTVCPNGHRIQPSLKIAQSMDLPGGPDSRMGIIVCPTCGIEFMAKSAEDFAFNSGGA
CKQCHGTGKIRELDESKLIGDENQTLAEGAVASWHLPGRNFMPTVAATLGVRTDVPYKDL
TDKEKNIVLHGEKKQYSVDFRTSTGRVFHTDKTLYENAYEAVYDSLKTVKSERSINKINQ
FFHFSVCPTCHGTRLNPELLTQLVGGMNIAEVSELTLGKLTDWETQTKQELPAEMKAMAD
VLFKNLTDTLRPLLELGLNYLTLSRNGNTLSTGELQRIQLSKTLRTETTGVLYVLDEPSI
GLHPDNVKGLINIFRALIAQGNSLVVVDHEVDIIEAADWVIEVGPGSGDAGGRIIAEGTP
SSLKQNRNSLIGPFISGKADIMHDKVPVSKDAERLTTHLEVDKYFNLHDITVTIPGNEIT
AVTGFSGAGKTSLILDSLVPAIESKKEKRSLPKQVKTLKTNLTDVVSVDAKPIGKNARSS
LATYTSIMDNLRRIFADLPESKKRHYGIAYFSYNNKQGACEHCGGVGVISLDIQYLPDME
EICPYCNGTRYKPEIQEIRWHGYTIVDLLNLSVKEALSVFQDVPAIEKQLQLLDEIGLSY
LHLGESTPSLSGGEAQRLKLVNHLNKKQAQTLFVFDEPSVGLHPQDVQTLLGVINKLKEK
GATVIIITHDLDLMANADYMIDLGPKGGSSGGKLMAAGTPQQLIEKSHSLTIDYLKEHFQ
KFGLI
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaaaaaacacaaaagctaatcaaattgaagtgcacggagggaaagtccataat
ttaaaaaatattgatgtaaatattccattggataagtttgtagctatttctggtccatct
ggttcggggaaaagttctttagcaatgggaattttgtacgcggaaggttctcgtcgttat
ttggaagctttgtcaacttatactagacgaagaatcagtcagaataaacggtcacaagtt
caagaggttaagcatattccttcagctattgctttacgtcaacgaccaaatgttccttcc
gagcgttcgaccgtgggttcgatgagtgaactgtttaatgtggttcggctgattttttcc
cgattgggctcaaccgtctgtccaaatggtcatcgaatacaacctagtttgaagattgct
caatcaatggatcttcccggaggtcccgatagtcgcatgggaattattgtttgtccaact
tgtgggattgagtttatggctaaatcagctgaggactttgcttttaattctggtggggct
tgtaaacagtgtcatggtacgggtaaaatccgtgaattggatgagagtaagttaattggc
gatgagaatcaaactcttgcagagggtgcagtcgcatcatggcatttaccaggtcgtaat
tttatgcctactgttgctgcaactttaggtgttcgaacagatgtcccttataaggacttg
accgataaggaaaagaatattgtcttgcatggcgagaagaaacaatattcggttgacttt
agaacttcaactggacgtgtatttcacaccgataagactctttatgagaacgcttatgag
gcggtttatgattccttaaagaccgttaagagtgaacgttctatcaataaaattaatcaa
tttttccatttttcagtctgcccaacttgtcatggaactcgtttgaatcctgagctgttg
acacaattagttggtggcatgaatattgctgaagtgtctgaactaaccttaggaaagcta
actgattgggaaacacagactaagcaagaattaccagctgaaatgaaagctatggctgac
gttttatttaagaatttaaccgataccttgcgtccattactagagttgggattgaattat
ttgacgctatctcggaatggaaatactttatcaactggtgagttgcaacggattcagctt
tcgaagacattgcggactgaaacaactggtgttttgtatgtgttggatgagccttcaatt
ggattgcatccagacaatgttaaaggcctaataaatattttcagagctttgattgcccaa
ggtaattcactggtggtagttgatcatgaggtcgatatcattgaagcagctgattgggtc
attgaagttgggcctggatctggggatgctggcggtcgcattattgccgagggcacaccc
agctcattgaaacaaaacaggaattcactaataggtccctttatttctggaaaagctgat
attatgcatgataaagttcctgtatccaaagatgctgaaagattaacaactcatttggaa
gttgataaatatttcaatctacatgatattactgtcactattcccggaaatgaaattacg
gctgtcactggtttctcaggcgctggtaagactagtttgattttagatagtttagtgcct
gcaattgaatcgaaaaaagaaaagcgctctttgccaaagcaagttaaaaccttgaagacc
aatttaacggatgttgtcagtgtcgatgccaagccaattggtaaaaatgctcgttcaagt
ttggctacttatacgtctattatggataatctaagacgaatttttgctgatttgccagaa
tctaagaagcgacattatgggattgcttatttctcatataacaataaacaaggtgcttgt
gaacattgtggtggggtcggcgtaatttcactagatattcaatacttgcccgatatggaa
gaaatttgtccttactgtaatggaactcgttataaaccagaaattcaggaaattcgttgg
cacggatatacgattgttgatttattaaacttgtcagtcaaagaagccttgagtgttttc
caagatgtgcctgcaattgagaagcagttacaattattggatgagattggtttgagttac
ttacatttaggtgaaagtactcctagtctgtctggtggtgaagcacaaagacttaaactc
gttaaccatctgaataagaaacaagcccagacgttatttgtttttgatgaaccatcagtg
ggattacatcctcaagatgtacagacattgcttggagttatcaataagctcaaggaaaag
ggggcaactgtcatcattattacgcatgatttggatttgatggcaaacgcagattatatg
attgatctgggacctaaaggcggttcttcaggtggtaagttaatggctgccggtactcct
caacaacttatcgaaaaatcgcatagtttaaccattgattacctaaaggaacatttccaa
aagtttggtttgatttaa
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