Companilactobacillus heilongjiangensis: JP39_11845
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Entry
JP39_11845 CDS
T04057
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lhi
Companilactobacillus heilongjiangensis
Pathway
lhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JP39_11845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhi03400
]
JP39_11845
DNA repair and recombination proteins [BR:
lhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JP39_11845
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JP39_11845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
DnaJ_CXXCXGXG
nSTAND1
AAA_29
AAA_21
AAA_16
nSTAND3
RsgA_GTPase
AAA_23
RNA12
ATPase
cobW
SeleniumBinding
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
ALB29992
UniProt:
A0A0K2LFC5
LinkDB
All DBs
Position
2659020..2661554
Genome browser
AA seq
844 aa
AA seq
DB search
MTIRHKNYIPDNIEVTGAKANNLKNINVEIPLNSFVAITGVSGSGKSSLAMDTIYAEGAR
KYLNALSTYTRRRITQVGRSDVKDIKNLPSTIALRQRPTVPSVRSTVGTMTESLNILRLM
FSRLSSVVCPNGHRLDPTLKISEVMDLPAADEAMGMMTCPTCGVKFMAFGAEDFAFNSDG
ACPTCQGTGFLKDIELSKIIPDETLSIDEGAVRSWNLPGRSLQKDIIKELGIRTDVPFKD
LNDHEKDVIVNGKELKREVIVPTKTGRTFKLNALYENAVIAVKNSLKNAKNENAVKRLER
FYSVKICPDCHGSRFNPKLFSNQLVGKNIAEVSNFTISQLQDFCKDIMAWLPSDMQALGR
NLTNELLDLLSPIDDLGLNYLSISRAGNTLSTGELQRIQLARTIRNQMTGVLYVLDEPSV
GLHAANVDGLIKILRELVRLGNSLVVVDHDTSIIAAADYVIEIGPDSGADGGRIISQGTV
DQIEAESDSVIQPYLTGKANIIKHQPEKTFEKGTISIAIGDRYNIHDMTAKFSKESLNVV
SGMSGSGKTTLIFDSLLPAMDDKIAGEPLPKFVKDVDTADIKNIVKVDSVPIGKNVRSTV
GTYTKILDHLRKLFADTPAAKAKKFTPTYFSYNNKQGACPNCGGTGVITLDIQYLPDMVQ
TCPVCHGDRYKKDILDIEWHGKNIAEILDMSVKEAAEFFKDVPQIENTLDVLVNIGLSYL
KLGESTPTLSGGEAQRMKLVTYMKRSQKNQLFIFDEPSVGLHPKDVGVLLDVFNKLLKKH
ATIIVIEHDLDIIANADYINDLGPEGGINGGKIVATGTPKTVADNPASLTGKYLKEHLQL
FNEY
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgacgataagacataagaattacattccggataacattgaggttacaggagctaaagcc
aataacctcaagaacatcaatgtcgaaataccactcaattcatttgtagcaattacgggt
gtatcgggttcaggaaagtcttccttggcaatggatacgatttacgccgaaggggctaga
aagtatctcaatgcgttgtcgacttacacgagaagaagaatcactcaagtaggccgttct
gatgtaaaagatattaagaatttgccttcaactattgcgttacgtcaaagaccaaccgtc
cccagtgtccgttcaaccgttggtacaatgaccgaaagtttgaacattttaagattgatg
ttttcacgtttgtcatcagtcgtttgtcctaatggtcaccgattagatccaacgttgaaa
atttctgaagtgatggatttaccagcagctgatgaagcaatggggatgatgacttgtcca
acctgtggcgttaaattcatggcttttggagctgaagatttcgcctttaattctgatggt
gcttgtccaacatgtcaggggactggtttcttaaaagatattgaattatcgaagattatt
cctgatgaaacgttgtcaattgatgagggagcagttaggtcatggaacttgccaggtcgc
tcattacaaaaggatattattaaagaattaggtattagaactgatgtaccattcaaagat
ttaaatgatcatgaaaaggacgttatcgtcaacggtaaggagttaaaacgagaagttatc
gttccgactaagacaggtcgaacattcaagttgaatgctttgtatgagaacgccgttata
gccgttaaaaatagtctgaagaatgctaaaaatgaaaatgctgtgaaacgcttagagaga
ttctattcagtaaaaatttgtccagattgtcacggcagccgttttaatccgaaactattc
agtaatcaattagttggcaagaatattgccgaagtttccaactttacgatttcacagtta
caagatttttgtaaggatatcatggcctggttgccaagtgatatgcaagccttaggtaga
aatttaactaatgaattattggacttattatcaccaattgacgatttaggactaaattat
ttatcgatttcacgagctgggaacacattgtcgacgggtgaattacaacgaattcaattg
gcacggacaatacgtaaccaaatgacgggtgtcctgtacgttttggatgaaccaagtgtt
ggtttacatgcggccaacgttgatggtttgattaagattttgcgtgaattagtacgcctt
ggtaattcattggttgtagttgatcacgatacaagtatcatcgctgcagctgactatgtg
attgaaattggtcccgattctggtgcggatggcggtcgaattattagtcaaggtactgtt
gaccaaattgaggctgaaagtgattcagttatccagccatatttgaccggtaaagctaat
attatcaagcatcagccggaaaaaacttttgaaaagggaactatcagtatcgctattggc
gaccgttacaatatccacgatatgacggctaaatttagcaaggagtcattgaatgtcgtt
tcagggatgtccggatcaggaaagacaaccttgatttttgacagtttattgccagcgatg
gacgataaaattgccggtgagccattgcctaagtttgttaaggatgtcgatacggctgat
attaaaaatatcgttaaagttgactctgttccgattgggaaaaatgttcgttcaaccgtg
gggacgtatacgaagatactggatcacttacggaagctatttgccgatacacctgctgct
aaagctaagaaatttacaccaacgtatttctcatacaataacaaacaaggcgcttgtcca
aattgtggcggtacaggcgtgattacattggacattcagtatttaccagatatggttcaa
acgtgtcctgtgtgtcacggtgatcgctataagaaggatattttggatattgaatggcat
ggtaagaatattgccgaaattttggatatgtcagttaaagaagcggctgaatttttcaag
gatgttcctcagattgaaaatacactcgatgttttggtaaatatcggtttgagttatctc
aaattgggtgagagtacgccaactttatccggtggtgaagctcagagaatgaagttagtt
acatatatgaagcgcagtcaaaagaaccaattattcatctttgatgaaccaagtgttggc
ttgcatccaaaagatgttggcgtgttgctagatgttttcaataaattactgaaaaagcac
gccacgattattgtgatcgagcatgatttggatattattgccaatgcggactatatcaac
gatttaggtcctgaaggtggcatcaatggtggtaaaatagttgcaacaggtactccgaaa
acggttgcagataatcctgccagtttgaccggtaagtatcttaaagaacatttacaattg
ttcaacgaatattaa
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