Lactobacillus helsingborgensis: DLD54_05040
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Entry
DLD54_05040 CDS
T06906
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03410
Base excision repair
lhs03430
Mismatch repair
lhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DLD54_05040 (recJ)
03430 Mismatch repair
DLD54_05040 (recJ)
03440 Homologous recombination
DLD54_05040 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lhs03400
]
DLD54_05040 (recJ)
DNA repair and recombination proteins [BR:
lhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DLD54_05040 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DLD54_05040 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DLD54_05040 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
ssDNA-exonuc_C
DUF2963
Motif
Other DBs
NCBI-ProteinID:
AWN34293
LinkDB
All DBs
Position
complement(1060547..1062823)
Genome browser
AA seq
758 aa
AA seq
DB search
MEWRKRKGDELAPAIIEKYQLSPITAKLLSLRRINTAEKIDYWFNATEADLADPFLMHDM
KKAVNRINQAIDAGEKITVYGDYDADGITATTIMVETLGILGADVHFFIPDRFKDGYGPN
LESYKKIVADGTKLIITVDNGITGVNEIAFAKSKGVDTIITDHHKFQEQVPDCYALVHCN
YPGQKYPFDDYCGAGVAYTICRALMQEPMPELLELAMIGTIGDMVKVSGEGHVIVKRGLK
MLNETERPGLRALIKKAVLQLGHIDETDVGFNIAPRLNAVGRLANASLAVELLLCDTDEK
AEEIAAKVEKLNDERKKLTATVFQECLEQVKNNGWDRSQTLVIYQPDFHEGVLGLVANKL
VEKTHKPTLVLTKNEAGIIKGSGRSVVGYNIFNALNPLKDKLFLKFGGHDFACGLSMTEE
KIPSLRKAFENNFNGSYNQNIRDYDFELPFANLDLKTIAEIKLAGPFGTDNVEPVFSIKH
PDITGCFYMGADKNHIKLTVSKSNKKLNVVGFNKKYLTRVLLPYIDQLFIGLQENCFRNQ
TKVQGIIKGIVFAAPKLAIPAPVIDLRTEKYVMGFADRYLLFDEKNKISASTKYDIDPAK
ITLINDYDSEGEVAVFLDVPHNQSELDAALTNNYAQLYLRFILDQLPVTQMPVKSDFEKL
LRYVYTHPGLSIDDYRLVGPFLQQSYDHILFILRVFSELHFIKIADNKIYAVKHPAKSKL
TASRYYLATRSQIAFIRELRNMPSKKLLMYVNEQLKQH
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
attgaatggcgcaaacgtaaaggtgatgaattagctcctgctataattgagaagtatcag
cttagcccaataacggctaagctgctttctttgcgcagaataaatactgcggaaaaaata
gattattggtttaatgccactgaagctgatttggctgatccttttctaatgcatgacatg
aaaaaggcagttaacagaattaatcaagcaattgatgcaggagaaaaaataacggtctat
ggtgattacgatgctgatggtattactgccaccactattatggtggaaacactgggcatt
ttaggtgccgacgtacattttttcattcccgatcgttttaaagatggctatggtccaaat
cttgaatcctacaaaaaaattgtagcagatgggactaaactgattattactgtagataac
gggattactggggttaacgagattgcttttgccaaaagtaaaggtgtagatacaataatt
acagatcaccataaatttcaagagcaagttcctgactgttacgctttggtacactgcaat
tatcccggacaaaaatatccgtttgatgattattgtggggcaggtgttgcctacactatt
tgtcgggcgttaatgcaggagccaatgcctgaattattggaattagcaatgattggcaca
attggtgatatggtcaaggtgtcaggagaaggtcatgtaatagtaaaacgtggccttaaa
atgcttaatgaaactgagcgaccgggactaagagctttaataaaaaaagcagttttacaa
ttaggacatattgacgaaactgatgttggctttaatattgcaccaagattaaatgctgtg
ggcagacttgccaatgcttctctggcagtggaattactattatgtgatactgatgaaaaa
gccgaggagatagctgctaaagttgaaaaattaaacgatgaacgcaaaaaactgactgca
actgtttttcaggaatgtcttgagcaagttaaaaataatggctgggacagaagtcaaact
ctggtaatttatcaacctgattttcatgaaggcgtcttgggtttagtagcaaataagctg
gttgagaaaactcataaacctaccttagttttaactaaaaatgaagctggaattatcaag
gggtctggaagatccgttgtcggttataatatttttaatgcgctaaatcccttaaaagac
aaactatttttgaaattcggtgggcatgattttgcttgcggattatcaatgactgaagaa
aaaattccttccttaagaaaagcctttgagaataattttaatggttcatacaaccagaat
atcagagattacgattttgaattaccgtttgctaatcttgatctaaagactattgcggaa
attaaattggcgggtccttttggcacagataatgtggagccggtgtttagcattaagcat
cctgacattactggctgcttttacatgggtgcagataagaaccatatcaaactaactgtt
agtaaaagcaataaaaaattaaatgtggtaggtttcaataaaaaatacttaaccagggtc
ctgttaccatacattgatcagctttttattggcttacaagaaaattgttttcgtaatcaa
actaaagtgcaaggtataattaaaggtattgtttttgcagcccctaaattagctattcct
gcaccagttattgatttacgaactgaaaaatatgtaatgggttttgcggataggtatctt
ttatttgacgaaaaaaataagatctctgcttctacaaaatatgatattgatcccgcaaaa
attacgctgattaatgattacgatagtgaaggcgaggtagctgtctttcttgacgttccc
cataatcaaagtgaattagatgcagccttgactaataattatgctcagctttacttacgg
tttattctggatcaattaccggtgacgcaaatgcctgtgaagtcagattttgaaaaatta
ttgcgctacgtatatactcatcctggtttatcgattgatgattatcgcttggttggacct
tttctacagcagagttatgatcatattctatttattttacgtgtattttctgagctgcac
tttattaaaatagcagataataaaatctatgctgttaaacaccctgctaaaagtaagtta
acggcttcacggtattatcttgctactaggtcacaaattgccttcattcgtgaattaaga
aatatgcctagtaaaaaattgctaatgtacgtgaatgagcaattaaagcaacattaa
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