KEGG   Linepithema humile (Argentine ant): 105671719Help
Entry
105671719         CDS       T04898                                 

Definition
(RefSeq) histone deacetylase Rpd3-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lhu  Linepithema humile (Argentine ant)
Pathway
lhu04213  Longevity regulating pathway - multiple species
lhu04330  Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:lhu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    105671719
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    105671719
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lhu03036]
    105671719
Enzymes [BR:lhu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105671719
Chromosome and associated proteins [BR:lhu03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     105671719
   HDAC complexes
    Sin3A-HDAC complex
     105671719
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    105671719
  Chromatin remodeling factors
   NuRD complex
    105671719
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl
Motif
Other DBs
NCBI-GeneID: 105671719
NCBI-ProteinID: XP_012221545
LinkDB All DBs
Position
Unknown
AA seq 497 aa AA seqDB search
MDPVKMSMQPHNRKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYR
PHKATADEMTKFHSDEYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAG
GSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDI
DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDE
SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPF
LMVGGGGYTIRNVSRCWTYETSVALGCEIANELPYNDYFEYFGPDFKLHISPSNMANQNT
PEYLEKIKTRLFENLRMLPHAPGVQVQAMPEDGAVIEDSEAEEKVNPDDRLPQRDLDKRI
QHENEYSDSEDEGEGGRRDNRSYKGSRKRPRLEKGQETIDADIKKEDDIKSEPKENEKDE
KVNPTNEETKKDGGANP
NT seq 1494 nt NT seq  +upstreamnt  +downstreamnt
atggatccagtaaaaatgtccatgcagccgcacaacaggaaacgcgtctgctactattat
gacagtgatattggaaattattattatggccaaggacatcctatgaagccacatcgtata
aggatgacgcacaatctactcttgaactatggactttatagaaaaatggagatatatcga
cctcataaagccacagcagatgaaatgacaaaatttcatagtgatgagtacattagattt
ttgagatccataaggccagataatatgtcagagtacaacaaacaaatgcaacgatttaat
gtaggtgaggattgtcctgtttttgatggcttgtacgagttctgtcaattgtcagctggc
ggatctgtagctgctgctgtaaagctcaacaagcaagcctcagaaatctgcatcaactgg
ggcggtggtttgcatcatgcaaagaagagcgaagcgtcgggcttttgttatgtgaacgac
attgtactcggaatcttagaattgctgaaatatcatcaaagagttttatacattgatatt
gatgttcatcatggcgacggtgtggaagaagctttttatacgactgatcgagtgatgaca
gtttcatttcataagtacggcgaatattttcctggaactggagatctccgcgatatcggg
gcagggaagggaaaatattatgccgttaatataccgttaagagatggtatggatgatgaa
agctacgagtcaatatttgttcccattatatcaaaagtaatggaaactttccaaccttca
gctgttgttttgcaatgtggagccgactcgttgacgggcgatcgactgggatgctttaac
ttgactgtgagaggtcatggaaaatgcgtggaatttgtaaaaaagtacaatttgcctttc
ctgatggtgggcggtggcggttatacaatcagaaacgtgtcaagatgttggacatatgaa
acatctgtcgctcttggatgcgaaattgcgaatgaacttccatataacgattacttcgaa
tattttggtcctgactttaagctgcacatcagtccttcgaatatggcgaatcaaaacact
cctgagtacctcgagaaaataaaaacgaggctgtttgaaaacttgagaatgctacctcac
gcacctggtgtacaagttcaagcaatgccagaagatggtgctgtcattgaggactcagaa
gctgaagaaaaggtgaatccagatgacagactgcctcaacgtgacttggataagaggata
caacatgaaaacgagtacagtgacagtgaagacgagggagaaggtggacgaagagataat
agatcgtacaagggatctcgaaaacgaccacgtttagaaaaaggccaagaaaccattgac
gctgatatcaaaaaagaagacgacataaaatctgagccgaaagaaaacgaaaaagatgag
aaagtgaatcccacgaatgaggagaccaagaaagacggcggagcgaatccctga

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