Lysobacter helvus: LYSHEL_18570
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Entry
LYSHEL_18570 CDS
T07483
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lhx
Lysobacter helvus
Pathway
lhx02020
Two-component system
lhx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lhx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LYSHEL_18570 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LYSHEL_18570 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhx03021
]
LYSHEL_18570 (rpoN)
Transcription machinery [BR:
lhx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LYSHEL_18570 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
BCT95986
LinkDB
All DBs
Position
complement(1935046..1936488)
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AA seq
480 aa
AA seq
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MKPRLQTSLGQHLVMTPQLRQAIRLLQLSTAELEVEIASAVESNPLLDWEESPPLETHDG
NGDARVRDDGTGDERSSHDDDRPPPEASAWDGDENETWYERIGPADSDDEPLAEQVAEGE
TLQDHLLWQLHLSHLSQRDRTIGVSIIESIDDDGYLRETIEAIAEGLRPGMNPSLDEVLT
VLHQVQRFDPPGVGARSLNECLQLQLDLLDADTPGRELARRMADGPLERLPKIGVAGLAH
ELQRPTEDIECAVHLLRSLEPRPGAQLGGLSADTYVTPDCVVWRQQGQWRVALAAGGRPR
ISIHRGYERMIRSANENDALYLRGRLQEARWLLKSLEARGDTLLKVMRCLLRQQSAFLEF
GDQALRPLTLREVAGEVGLHESTISRAIARKYVRTPRGTMPLRAFFASGIDTGGGGEASS
TAIQAMIRRLIEGEDPRKPLSDARLAENLKASGVPVARRTVAKYREAMSIPSSQDRLRIG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccgcctccagacatcgctgggacagcacctggtgatgaccccgcagttgcgg
caggccatccgcctgttgcagctgtcgaccgcggagctcgaagtcgagatcgccagcgcg
gtcgagagcaacccgttgctggactgggaggaatccccgccgctggaaacccacgacggc
aacggcgacgcccgcgtccgcgacgacggcaccggcgacgaacgcagcagccacgacgac
gaccgcccgccgccggaagcctccgcgtgggacggcgacgaaaacgaaacctggtacgaa
cgcatcggcccggccgacagcgacgacgaacccctcgccgaacaggtcgccgaaggcgag
acgctgcaggaccacctgctgtggcagctgcacctcagccacctctcgcagcgcgaccgc
acgatcggcgtgtcgatcatcgagtcgatcgacgacgacggttacctgcgcgaaacgatc
gaagccatcgccgaaggcctgcggcccggcatgaacccgagcctggacgaagtgctgacc
gtgctgcaccaggtacagcgtttcgatccgcccggcgtgggcgcgcgttcgctcaacgaa
tgcctgcaactgcaactcgacctgctggacgccgacacgcccggacgcgaactcgcgcgg
cgcatggccgacggtccgctcgaacgcctgccgaagatcggcgtcgccggcctggcgcac
gaactgcagcgccccaccgaagacatcgaatgcgccgtgcacctgctgcgttcgctcgaa
ccgcgccccggcgcgcagctgggcgggttgtccgcggatacctacgtcacgcccgactgc
gtcgtgtggcgccagcagggccagtggcgcgtcgcgctcgccgccggcggccgtccgcgc
atctcgatccatcgcggctacgaacgcatgatccgctcggcgaacgaaaacgacgcgctc
tacctgcgcggccgcctgcaggaagcgcgctggctgctcaagagcctggaagcgcgcggc
gacacgctgctcaaggtgatgcgttgcctgttgcgccagcaatcggcgttcctggaattc
ggcgaccaggccttgcgcccgctcaccctgcgcgaagtcgccggcgaagtgggcctgcac
gaatccaccatttcccgcgccatcgcacgcaagtacgtccgtacaccgcgcggcacgatg
ccgttgcgcgcgttcttcgcgtccggcatcgacaccggcggcggcggcgaagcctccagc
accgccatccaggcgatgatccggcgcctgatcgaaggcgaagacccgcgcaagccgctc
tccgacgcgcgcctggccgagaacctcaaggcctcgggcgtcccggtggcccgccgcacc
gtggccaagtaccgcgaggccatgagcatcccgtcctcgcaggaccgcctgcgcatcggc
tga
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