Limnohabitans sp. 103DPR2: L103DPR2_01187
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Entry
L103DPR2_01187 CDS
T04120
Symbol
polA_1
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03030
DNA replication
lim03410
Base excision repair
lim03420
Nucleotide excision repair
lim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L103DPR2_01187 (polA_1)
03410 Base excision repair
L103DPR2_01187 (polA_1)
03420 Nucleotide excision repair
L103DPR2_01187 (polA_1)
03440 Homologous recombination
L103DPR2_01187 (polA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lim03032
]
L103DPR2_01187 (polA_1)
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_01187 (polA_1)
Enzymes [BR:
lim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L103DPR2_01187 (polA_1)
DNA replication proteins [BR:
lim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L103DPR2_01187 (polA_1)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
L103DPR2_01187 (polA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L103DPR2_01187 (polA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ALK91589
UniProt:
A0A0P0MER9
LinkDB
All DBs
Position
1196555..1199341
Genome browser
AA seq
928 aa
AA seq
DB search
MSDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPASPATGAIRGMINMMERLRKDIPAEYA
VCVFDAKGPTFRDEIYPEYKQNRSPMPDDLRSQIEPIHELVRLMGWKVLDVPGVEADDVI
GTLAAVGASHGIEVIVSSGDKDLAQLVNEHITIIDTMNGKRRDLAGVQEEFGVPASLMLD
YQILVGDTVDNVPGVQKVGPKTAAKLLLEYGSLDNLMAHADEVKGVVGENLRKAVDWLPT
GRQLLKIRTDCDLNGYVPELPSLETIRLGEPNEADLLAFYEKYGFKGLVRSRGAGAPESS
GASKPIKAAFVPQDDLFAEPEPVVTVTGEKQYETILTWDQFNAWLPKLEAAEVVAIDTET
TSLDAMRADLVGISWSVKPGEAAYLPLRHDGPDAPVQLPLNDVLAKLKPWLENPLKLKVG
QHIKYDRHVFANVGIEVHGYAHDTMLQSYVLEVHKPHSLTSLALRHVGRTGITYEDLCGK
GAHQISFAQVDVEKASEYSCEDSDQCLDVHGVLWPRIQADAKLRAIYDIEIATSEALFRI
ERNGVLIDGPTLAAQSQALGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGLPVIK
KTATGARSTDEEVLEKLAEDYPLPARILEHRSLSKLKGTYTDKLAQMALPRTGRVHTHYA
QAVAVTGRLSSNDPNLQNIPIRTAEGRKVREAFVAPAGSLIASADYSQIELRIMAHLSGD
EALLRAFHQGLDVHKATAAEVFGLTPDQVSSEQRRYAKTINFGLIYGMSAFGLAKALGID
NGAAKNYIERYFQRFAGVKRYMDETREQAKSQGYVETVFGRRLYLPEINSPNGPRRAGAE
RAAINAPMQGTAADLIKLSMIAVQEGIDREQRKTKVIMQVHDELVFEVPEDEVEWLKVAV
PKWMADVAVLKVPLLAEVGVGLNWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaagaaaaccctgctgttggtcgatggctccagctatctgtaccgtgccttc
catgccatgcccgatttgcgtgcagttcctggcgaccctgccagtcctgccaccggcgcc
attcgcggcatgatcaacatgatggagcgtttgcgcaaagacatccctgccgagtatgcg
gtgtgtgtgttcgatgccaagggccccacctttcgcgacgagatttaccccgagtacaag
caaaaccgcagccccatgccagacgatttgcgctcgcaaattgaacccatccatgaattg
gttcgcttgatgggttggaaagtgctggatgtaccgggcgttgaagccgatgacgtgatt
ggtactttggccgctgtaggtgcttcacacggcatcgaagtgattgtgtccagcggtgac
aaagacttggcccagttggtcaacgagcacatcaccatcatcgacaccatgaacggcaag
cgccgagacctggctggggtgcaagaagagtttggtgtccctgctagcctcatgctggac
tatcaaattttggtaggagacaccgtggacaacgtgccgggtgtgcaaaaggtgggtcct
aaaacagccgccaaattgttgctggaatacggttcgctcgacaacttgatggcgcatgcc
gatgaagtgaagggtgtggtgggtgagaacctgcgcaaggccgtcgattggttgccgacc
ggtcgtcagcttttgaaaattcgcaccgattgcgatttgaacggctatgtgcccgagttg
ccatcgctggaaaccattcgtttgggggagcccaacgaagcggatttgttggctttctat
gaaaagtatggattcaaaggtttggttagaagccggggtgcaggcgcacctgaatcctcc
ggtgcaagcaagccaatcaaggctgcatttgtgccacaggatgatttgttcgcagagccc
gagccagtggtgacagtgacgggtgaaaaacaatacgaaactattttgacttgggaccaa
ttcaacgcatggctaccgaagttagaggcggcagaggtggtggccattgacacggaaacc
acgtccctagatgccatgcgtgcagacttggtgggcatcagttggagcgtgaagcctggc
gaagctgcgtacttgcccttgcgccatgacggcccagatgcacccgtgcaattgcctctg
aacgacgtactggccaagctcaagccctggctagaaaatcccctcaaactcaaggtgggt
cagcacatcaaatacgaccgccatgtgtttgccaacgtgggcattgaagtgcatggctat
gcccatgacaccatgttgcaaagttatgtgcttgaagtgcacaagcctcacagcttgacc
agtttggcgttgcgacatgttggcagaacgggcatcacttacgaagatttgtgcggcaaa
ggcgcgcaccaaatttcatttgcacaagtcgatgtggaaaaagcttctgagtattcttgt
gaagattcagaccagtgtttggatgtgcatggtgtgctttggccgcgtattcaagccgat
gccaaattacgcgccatctacgacattgaaattgccaccagcgaagctttgtttcgcatt
gaacgcaatggcgtgttgattgatggccccacgctggctgcgcaaagccaagctttgggc
cagcgcattctgcaactcgaaacagaggcgtacgaaattgcagggcaacccttcaacttg
agcagccctaagcagttgggtgaaatcttttttgacaagctgggtttgccagtgatcaaa
aaaacggccactggtgcccgcagcaccgatgaagaagtgctggagaaattggccgaggac
tatcccttgcctgcacgcatcttggaacaccgcagcctgtccaaactcaaaggcacttac
accgacaagctggcgcagatggccttacctagaacgggcagggtccacacgcactatgcg
caagccgttgcggtcacaggacgtttgtctagcaacgatcccaacttgcaaaacattccc
attcgcacagccgaaggccgcaaagtgcgcgaagcatttgtggcacccgccggcagcttg
atcgccagtgccgattactcgcaaattgaattgcgcatcatggcgcacctcagtggcgat
gaagccttgctgagagcgtttcatcaaggcttggacgtgcacaaagccactgcagcagaa
gtgttcggtttaacgcccgaccaagtatcgagcgagcaacgccgctatgccaaaaccatc
aacttcggattgatttacggcatgagtgcatttggcttggccaaggcgctgggcatcgac
aatggggctgccaaaaattacatcgaacgttacttccagcgctttgcaggcgtaaagcgc
tacatggacgagacgcgcgagcaggccaaatcccaaggctacgttgaaacggtgtttggc
cgtcgcttgtatttgcctgaaatcaattcgcccaacggtccaaggcgtgcgggtgccgag
cgcgcagccatcaatgcgcccatgcaaggcacggccgctgacttgatcaagctatcgatg
atcgctgtacaagagggcatagaccgtgagcaacgcaaaaccaaagtgatcatgcaagtg
cacgatgaattggtgtttgaagtgccagaggacgaggtggaatggctcaaagtggccgtg
ccgaaatggatggcggatgtagccgttctcaaggtgccattgctcgctgaagtgggtgtg
ggcctgaattgggatcaagcgcactga
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