Lactobacillus kullabergensis: DKL58_02435
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Entry
DKL58_02435 CDS
T06382
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lkl
Lactobacillus kullabergensis
Pathway
lkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL58_02435 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkl03019
]
DKL58_02435 (rnr)
03016 Transfer RNA biogenesis [BR:
lkl03016
]
DKL58_02435 (rnr)
Enzymes [BR:
lkl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DKL58_02435 (rnr)
Messenger RNA biogenesis [BR:
lkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DKL58_02435 (rnr)
Transfer RNA biogenesis [BR:
lkl03016
]
Prokaryotic type
tRNA degradation factors
DKL58_02435 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AWM74893
UniProt:
A0A2Z3HEG6
LinkDB
All DBs
Position
477791..480115
Genome browser
AA seq
774 aa
AA seq
DB search
MAQNENILANVLEIFRHNPKKQYQVEQIDRMLRRDRLGSFSDMVKALSYLEQEKKIITDG
NGRYQLAEENTEVEGIFKANSKGFGFVKLEDEDSDDIFIARDYTAYAVDGDRVKVKITAG
GNPWNGKGPEGQIEEILERGTKTLVGEFHSMTDAQIKTSHFIGYVLSSNKKLANYRVYIS
QDSLRPQKQDIVKVSLANYPDKDNPDSMTGVVTNIIGNKNLPGVDIMAIVSEHDVRTEWS
EDALEQSNAIPDHVTEAEMADREDIRDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH
IADVAHYVTENSPLDKEAFTRGNSTYLVDRVIPMLPFRLSNGICSLNEGQDRLVLSCEME
ISPEGKRVNYRIHPSVMRSHGRMTYNNVNKALDQDNHEELEEKYVKLAPMLQDMAELHNV
LYQQRHQRGAIDFEEPEAKIIVDDQGKPTDIVLHDRGIAEKMIESFMLIANETVAEDFYR
KHVPFLYRVHETPDGERIKGFFEFCSAFGLHITADPNHVKPIDLQKVVAKTTDTPEEAVV
QMMMLRSLKQAHYSEEPLGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHAYSENGINQKVQ
DHFASYLPEVADQTSTQERVSVDTEREVNDLKMTEYMADKVGEHFDAVVSSVTSFGMFIQ
LPNTVEGLIHISNLTDDFYSYNEKSMTLTGRGTHKQYHVGMPLKVTLTNASVEQHQLDFE
IYDPNAPKKSHNNRGAKNERHGNRGFRNDHAHKGHYRNNFQKNGNHPHLSRYKH
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaacgagaatatcttagccaatgttttagagatttttcgtcacaatcctaaa
aaacaatatcaagttgaacaaattgaccgtatgttgcgccgagacagacttggcagtttt
tcagatatggtcaaagcattatcctatttggaacaggaaaagaaaataattaccgatggc
aatggccgatatcaattagctgaggaaaataccgaagtggaaggcatttttaaggcaaat
agcaaaggctttggtttcgtcaaactcgaggacgaagattctgatgatatttttattgct
cgtgattatacagcatatgccgtggacggtgatcgtgttaaggtcaaaatcactgctggt
ggtaatccatggaatggtaaagggcctgaaggacaaatagaagaaattctcgaacgtggc
acgaaaacacttgtcggtgaatttcattcaatgactgatgctcaaataaaaaccagtcat
tttattggttatgttctcagctcaaataaaaaactggcaaactatcgcgtttatattagt
caggacagtttgcgtccacaaaaacaagatattgtcaaagtatcgcttgctaactatcct
gacaaagataatccagattcgatgactggtgttgttaccaatattattggtaacaaaaat
ttaccaggcgtcgatattatggccattgtttctgagcatgatgttcgtacagaatggtct
gaagatgctcttgagcagtctaatgccattcctgatcacgtgactgaggcagaaatggcg
gatagagaggacattagggaccagcccgcagttaccattgatggggatgattctaaagac
ttcgatgatgccgtggttttatggaaacttcctaacggtaactatcatttaggggttcat
attgctgatgtagcgcattatgtgacggaaaattctcctttggacaaagaagcttttacc
aggggtaatagtacatatcttgttgaccgtgttattccaatgttgccgtttagattatct
aatggcatctgctctttaaatgaggggcaagatcgtcttgttttgtcttgcgaaatggaa
atttctccagaaggaaaaagagttaattatcgtattcatccctctgttatgcgatcacac
ggcagaatgacttataacaatgtcaacaaggccttagatcaagataatcatgaagaacta
gaggaaaaatacgttaaactggcacccatgttgcaagatatggccgaactgcataatgtg
ttataccagcaaaggcatcagcgtggtgcaatagattttgaggaacctgaagcaaaaatt
attgttgatgatcaaggtaaacccacagatatcgtgttacacgatcgtggtatagctgaa
aaaatgatcgaatcattcatgcttatagcaaatgaaactgttgccgaagacttttatcgc
aaacacgttccatttctgtatcgtgtacatgaaactccagatggtgagcgtattaaaggc
ttctttgaattttgcagtgcttttggattgcatattactgctgatcccaatcacgttaaa
ccaattgacttgcaaaaagtcgtggctaaaacaactgatacacctgaagaagcagtagtt
caaatgatgatgcttcgtagcttaaagcaggcacattattcagaagaaccactagggcat
tttggtcttgctgctaaatactacactcattttacttcaccaattagacggtattccgat
ttaatggtgcatagaatgattcatgcatatagtgaaaatggtattaaccaaaaagtacag
gatcattttgccagctatctacctgaagttgcagatcaaacttcaacacaggaacgtgta
tctgttgatactgaaagagaagtaaacgacttaaagatgacagaatatatggcggataaa
gttggagaacactttgatgctgttgtttcttctgtgactagttttggcatgtttatccag
ttgcccaatacagttgaagggttaattcatatttcaaatttgacggatgatttctacagt
tataatgaaaaaagcatgacactgactggacgcggtactcataaacaatatcatgttggg
atgccccttaaagtaacccttacgaatgccagcgttgaacaacatcagcttgattttgaa
atctatgatcctaatgctcctaagaagtctcataacaatcgcggtgctaaaaacgaaaga
catggtaatcggggatttcgcaacgatcacgcacataagggtcactatcgtaacaatttt
caaaaaaatggtaatcatccacatttaagtagatataaacattag
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