KEGG   Lactobacillus kullabergensis: DKL58_02435
Entry
DKL58_02435       CDS       T06382                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lkl  Lactobacillus kullabergensis
Pathway
lkl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lkl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DKL58_02435 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lkl03019]
    DKL58_02435 (rnr)
   03016 Transfer RNA biogenesis [BR:lkl03016]
    DKL58_02435 (rnr)
Enzymes [BR:lkl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     DKL58_02435 (rnr)
Messenger RNA biogenesis [BR:lkl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DKL58_02435 (rnr)
Transfer RNA biogenesis [BR:lkl03016]
 Prokaryotic type
  tRNA degradation factors
   DKL58_02435 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1
Other DBs
NCBI-ProteinID: AWM74893
UniProt: A0A2Z3HEG6
LinkDB
Position
477791..480115
AA seq 774 aa
MAQNENILANVLEIFRHNPKKQYQVEQIDRMLRRDRLGSFSDMVKALSYLEQEKKIITDG
NGRYQLAEENTEVEGIFKANSKGFGFVKLEDEDSDDIFIARDYTAYAVDGDRVKVKITAG
GNPWNGKGPEGQIEEILERGTKTLVGEFHSMTDAQIKTSHFIGYVLSSNKKLANYRVYIS
QDSLRPQKQDIVKVSLANYPDKDNPDSMTGVVTNIIGNKNLPGVDIMAIVSEHDVRTEWS
EDALEQSNAIPDHVTEAEMADREDIRDQPAVTIDGDDSKDFDDAVVLWKLPNGNYHLGVH
IADVAHYVTENSPLDKEAFTRGNSTYLVDRVIPMLPFRLSNGICSLNEGQDRLVLSCEME
ISPEGKRVNYRIHPSVMRSHGRMTYNNVNKALDQDNHEELEEKYVKLAPMLQDMAELHNV
LYQQRHQRGAIDFEEPEAKIIVDDQGKPTDIVLHDRGIAEKMIESFMLIANETVAEDFYR
KHVPFLYRVHETPDGERIKGFFEFCSAFGLHITADPNHVKPIDLQKVVAKTTDTPEEAVV
QMMMLRSLKQAHYSEEPLGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHAYSENGINQKVQ
DHFASYLPEVADQTSTQERVSVDTEREVNDLKMTEYMADKVGEHFDAVVSSVTSFGMFIQ
LPNTVEGLIHISNLTDDFYSYNEKSMTLTGRGTHKQYHVGMPLKVTLTNASVEQHQLDFE
IYDPNAPKKSHNNRGAKNERHGNRGFRNDHAHKGHYRNNFQKNGNHPHLSRYKH
NT seq 2325 nt   +upstreamnt  +downstreamnt
atggcacaaaacgagaatatcttagccaatgttttagagatttttcgtcacaatcctaaa
aaacaatatcaagttgaacaaattgaccgtatgttgcgccgagacagacttggcagtttt
tcagatatggtcaaagcattatcctatttggaacaggaaaagaaaataattaccgatggc
aatggccgatatcaattagctgaggaaaataccgaagtggaaggcatttttaaggcaaat
agcaaaggctttggtttcgtcaaactcgaggacgaagattctgatgatatttttattgct
cgtgattatacagcatatgccgtggacggtgatcgtgttaaggtcaaaatcactgctggt
ggtaatccatggaatggtaaagggcctgaaggacaaatagaagaaattctcgaacgtggc
acgaaaacacttgtcggtgaatttcattcaatgactgatgctcaaataaaaaccagtcat
tttattggttatgttctcagctcaaataaaaaactggcaaactatcgcgtttatattagt
caggacagtttgcgtccacaaaaacaagatattgtcaaagtatcgcttgctaactatcct
gacaaagataatccagattcgatgactggtgttgttaccaatattattggtaacaaaaat
ttaccaggcgtcgatattatggccattgtttctgagcatgatgttcgtacagaatggtct
gaagatgctcttgagcagtctaatgccattcctgatcacgtgactgaggcagaaatggcg
gatagagaggacattagggaccagcccgcagttaccattgatggggatgattctaaagac
ttcgatgatgccgtggttttatggaaacttcctaacggtaactatcatttaggggttcat
attgctgatgtagcgcattatgtgacggaaaattctcctttggacaaagaagcttttacc
aggggtaatagtacatatcttgttgaccgtgttattccaatgttgccgtttagattatct
aatggcatctgctctttaaatgaggggcaagatcgtcttgttttgtcttgcgaaatggaa
atttctccagaaggaaaaagagttaattatcgtattcatccctctgttatgcgatcacac
ggcagaatgacttataacaatgtcaacaaggccttagatcaagataatcatgaagaacta
gaggaaaaatacgttaaactggcacccatgttgcaagatatggccgaactgcataatgtg
ttataccagcaaaggcatcagcgtggtgcaatagattttgaggaacctgaagcaaaaatt
attgttgatgatcaaggtaaacccacagatatcgtgttacacgatcgtggtatagctgaa
aaaatgatcgaatcattcatgcttatagcaaatgaaactgttgccgaagacttttatcgc
aaacacgttccatttctgtatcgtgtacatgaaactccagatggtgagcgtattaaaggc
ttctttgaattttgcagtgcttttggattgcatattactgctgatcccaatcacgttaaa
ccaattgacttgcaaaaagtcgtggctaaaacaactgatacacctgaagaagcagtagtt
caaatgatgatgcttcgtagcttaaagcaggcacattattcagaagaaccactagggcat
tttggtcttgctgctaaatactacactcattttacttcaccaattagacggtattccgat
ttaatggtgcatagaatgattcatgcatatagtgaaaatggtattaaccaaaaagtacag
gatcattttgccagctatctacctgaagttgcagatcaaacttcaacacaggaacgtgta
tctgttgatactgaaagagaagtaaacgacttaaagatgacagaatatatggcggataaa
gttggagaacactttgatgctgttgtttcttctgtgactagttttggcatgtttatccag
ttgcccaatacagttgaagggttaattcatatttcaaatttgacggatgatttctacagt
tataatgaaaaaagcatgacactgactggacgcggtactcataaacaatatcatgttggg
atgccccttaaagtaacccttacgaatgccagcgttgaacaacatcagcttgattttgaa
atctatgatcctaatgctcctaagaagtctcataacaatcgcggtgctaaaaacgaaaga
catggtaatcggggatttcgcaacgatcacgcacataagggtcactatcgtaacaatttt
caaaaaaatggtaatcatccacatttaagtagatataaacattag

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