Leuconostoc lactis: BCR17_05445
Help
Entry
BCR17_05445 CDS
T04460
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llf
Leuconostoc lactis
Pathway
llf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCR17_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llf03400
]
BCR17_05445
Enzymes [BR:
llf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCR17_05445
DNA repair and recombination proteins [BR:
llf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCR17_05445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
AAA_22
TniB
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANY11848
LinkDB
All DBs
Position
1092420..1095941
Genome browser
AA seq
1173 aa
AA seq
DB search
MLTDFLAQSETIQNITTHATEDSTQLLLGVHGSARAASIAALYQAQPRQMLVVTDTQVHA
DQLLADLSQLTTAAMGFPAEESLATEIAISSPELRMQRVATLLALRRQEKVIVVTSLAGV
ERLLPKPETLDQANLNLAVGETYALDNIKATLMMMGYTPTKLVQTPGEFAQRGSIIDIYP
FTGEEPVRLDFFDDELDQIKSFDVSTQKRTGNFETATIEPVTDFIVSETDYTAAAASIEA
AFNDYRRELVGVEKKHATTGFALTQQLLETRVRENRLLPYATHFFGGETTLLAYFQPEHL
LILDEYTRIKETGLTQHNQAQDWVEQQISSYQLLPRQTFRADLTTLLHQDKRATLYLANF
KRGLSQMKWTNLIEVTTRPANQYYGQMPALMTDLDQAQGAGTTTILLLDDAKQRQNLQTS
LTDLEQPVLETRTVQPHHVQMMAGDLSAGFEWPQLHLTVLTAHELFAKSRRTTPRPRQMA
NAERLKSYNELNVGDYVVHVNHGIGRYEGLQTMTVDGGKQDYLTIAYQKNAKIFIPVTQL
NLIQKYIGASDAAKAPKLNKLGGTEWAKTKRQVAAKIEDIADDLLELYAQREAEAGYAFP
PDDTAQLKFDTAFGYPETPDQMRSIEEIKADMQKPRPMDRLLVGDVGFGKTEVALRAIFK
AAHAGKQVAFLAPTTILVQQHYETMLARFSAFPELKIGVLSRFQTPAQNKAVIAKLKAHE
IDIVVGTHRLLSQDVTFADLGLLVIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTL
NMAMVGARDLSVIETPPANRFPIQTYVLEADWTIVRNAIEKELARDGQVFYLHNRVADLD
RVVSQIEELVPSARVAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTL
IVENADHMGLSQLYQLRGRVGRSTRLAYAYFTYPFSRTPSEEAEKRLAAIRDFTELGSGF
RIAMRDLSIRGAGDLLGKQQHGFIDSVGYDMYTQLLKEAVAKKQGHPDATPAPQETDAEL
ILGVLAYLPEDYVADNAQKIELYTRIRQARTDDDFADIEADMLDRFGDMPDEVARLLLVG
QIKQLADQAQVTNIRRQRQQLVMTFSPEATARLAGEAVFATLVDVPLKVAVRSESGQLQV
IMTVNDVAESSIWLHILKDYLRVVIAKQQESQG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgttaacggattttctagcacaatcagaaacaattcaaaatattacgactcacgccacc
gaggattcgacgcaactcctgttaggggtacatggcagcgcgcgtgctgccagtattgcg
gcgctttatcaagcccagccacgccaaatgttagtggtgactgatacacaagttcatgct
gatcaacttttggccgatttatcccagttgacgacggcggccatgggttttccggcggaa
gaatcgttagccacggaaatagccattagttcacctgaattgcgtatgcaacgtgtggcc
acactgttggccttgcgacgccaagaaaaagtgattgtcgtgacaagtttggcgggcgtt
gaacgcctgttgccaaagccagaaacgttggatcaggccaacttgaacttggctgtcgga
gagacgtatgcgctggacaatatcaaagcgactttgatgatgatggggtatacgccaacg
aagttggtgcaaacccctggtgaatttgcgcaacgcggctccattattgatatttatccg
ttcactggtgaggaacccgtgcgattggacttttttgatgatgaattagatcaaattaaa
agttttgatgtgagtacgcaaaagcggacaggcaattttgaaacggctaccattgaaccg
gtgacggattttattgtgtcagaaacggattatacggccgctgctgctagtattgaggct
gcttttaatgactaccgtcgtgagcttgttggcgtggaaaaaaagcatgccacgactggt
tttgcgttaacgcagcagttgttagaaacacgtgtgcgtgaaaatcgcttgttgccgtat
gcgacccactttttcggtggtgaaacgacgctactggcttattttcaaccagaacacttg
ttgatattggatgagtatacacggattaaagaaaccggccttacccaacataaccaagca
caagactgggttgaacagcaaatttcaagctaccaattactaccacggcagacttttcgt
gctgatttgacgacgctattgcatcaagacaagcgggcaaccttgtatttggcgaatttt
aagcgtggcctaagccaaatgaaatggacaaatctcattgaagtgaccacgcgaccggca
aatcaatattatggtcaaatgccagcgctaatgacggatcttgatcaggctcaaggggcg
gggaccaccactattttgttgcttgatgatgccaaacaacggcaaaatctgcaaacgtcg
ttgactgatttagaacagcctgtgctggagacccgcacggttcagcctcatcatgtccaa
atgatggccggggacttgtcggctggctttgaatggcctcagctgcaccttacggtgtta
acggctcacgaactgtttgctaagtcacgccggacaacaccacgtccacgacaaatggcg
aatgctgaacggttgaagtcatataatgagttaaatgtgggtgattatgttgtccacgtt
aaccatggtattggccgttatgaaggcttacagaccatgacggttgatggtggcaagcaa
gattacctcacgattgcttaccaaaaaaatgccaagatttttattcctgttacccaatta
aatttgattcaaaaatatattggggcttctgatgctgctaaggcacccaagttaaataag
ttgggtggtaccgagtgggcgaagaccaagcgccaagtcgcagctaaaatagaagacatt
gcggatgatctgcttgagttatatgcccaacgggaagcggaagctggatatgcttttcca
ccagatgatacggcgcaactgaagtttgatacggcatttggttatccagaaacacctgac
cagatgagatcgattgaagaaatcaaagcggacatgcaaaaaccacggccaatggatcgg
ctgttggttggcgatgttggttttggtaaaacggaagtggccttacgggcgattttcaaa
gcagcgcatgcgggcaagcaagttgcctttctggcaccaacaacaatcttagtccaacaa
cactatgagacaatgttggcgcgctttagtgcatttcctgaattgaaaattggggtgtta
agccgctttcaaacgccggcacaaaataaagcggtgattgctaagctaaaggcacatgaa
attgacatcgtggtgggcacgcatcgtttgttaagccaagatgtgacgtttgctgattta
ggtctcttagttattgatgaagaacaacgctttggggtgaagcataaggagcggttgaag
cagttgcgtcacagtgttgacgtcctgacattgactgcaacgccaatcccaagaacgtta
aatatggcgatggttggtgcgcgtgatttatcagtgattgaaacgccaccagctaatcgt
ttcccgatccaaacctatgtattggaagcagactggaccattgtgcgtaatgccattgaa
aaagagctggcacgtgatggccaggtgttttatttgcacaatcgggtggctgacttggac
cgtgtggtcagtcaaattgaagaattagtcccatccgcacgcgtggcggcgattcacggg
caaatgtctgaaacgcaattggaaagcatcctatttgattttttgaatgggaattatgat
gttttggtgaccactaccatcattgaaaccggtgtggatattccgaatgccaacacactc
attgttgaaaatgcggatcacatgggcttatcgcaactctatcagttacgtggtcgtgtt
ggtcgttcaacccgtttggcctatgcctacttcacttatcctttttcacggacacccagt
gaagaagcagaaaagcgcttagcagcgattcgtgattttacggaattaggttccggtttc
cggattgccatgcgtgatttgagtattcgtggcgctggtgatttattagggaaacaacaa
cacggctttattgattcagtggggtatgacatgtatacccaactgcttaaagaagctgta
gccaagaaacaagggcaccctgacgccacacctgcaccacaagaaaccgatgcggaattg
attttgggtgttttggcctatttgccagaagactacgtggcggataatgcgcaaaaaatt
gaattatatacccgtattcgacaagcacgtacagatgacgactttgcagatattgaagcg
gatatgctggatcgttttggcgatatgccagatgaggtcgcgcgtttgcttttggtaggg
cagatcaaacagctagctgatcaagcccaagtgaccaatattcgtcgacaacgccaacaa
ctggtaatgacctttagcccagaagcgacagcccgcttggctggggaagcggtatttgcg
accctggttgacgtaccgttaaaggtcgcagtccggtcagagtcagggcaattacaagtc
atcatgactgtcaatgacgtcgccgaaagtagcatttggctccatatcctgaaggattat
ttacgtgtcgtcattgcgaaacaacaagaaagtcagggataa
DBGET
integrated database retrieval system
