Lactococcus lactis subsp. cremoris MG1363: llmg_1586
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Entry
llmg_1586 CDS
T00475
Symbol
vacB1
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
llm
Lactococcus lactis subsp. cremoris MG1363
Pathway
llm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
llmg_1586 (vacB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llm03019
]
llmg_1586 (vacB1)
03016 Transfer RNA biogenesis [BR:
llm03016
]
llmg_1586 (vacB1)
Enzymes [BR:
llm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
llmg_1586 (vacB1)
Messenger RNA biogenesis [BR:
llm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
llmg_1586 (vacB1)
Transfer RNA biogenesis [BR:
llm03016
]
Prokaryotic type
tRNA degradation factors
llmg_1586 (vacB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
CAL98161
UniProt:
A2RLJ3
LinkDB
All DBs
Position
complement(1560360..1562819)
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AA seq
819 aa
AA seq
DB search
MSIREVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLHFTAKGKV
ELAEQEEAKVVISGIFRANAAGFGFVSIDADEPDVFIGRGQTGFALDGDEVFIEIDKNAN
SLKGTAAEGHVVEIIRHELHQVVGTFVALNDEEKEQTGLIGFVKSRNKKIPYRVYLGDEG
LKPENKAIVRVEITHHPDKEFPQTMQGLVTEIIGQANDQGIDVLEVLASMDIVSEFPKEV
LEQADSVPEEVPESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIAD
VSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRLNRLTQSCVMEISP
EGRVVNYQISQSIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMR
KQRGAIDFDTVEAKIIVNEKGLPIEIRKRSRGIAERMIESFMLEANETVATHFEAHGLPF
IYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLL
RSMQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIPANLLQKWEE
KIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVDEEFEGIIASVTRFGMFIELENTI
EGLVHISTLKGDYFTYHERMLALIGERTGLTFKIGQPIKIKVVKADKMTGEIDFEYLPSE
LDLIDKSAKAKKKPESKGRKKSNQSLKVKSVAPKAAGKAGSKSKEGRSTDGKPEFDKKKK
KSGKKPFYSKTAKGKFTDKKENGKKFTDGRKKHTKDLKF
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagtattagagaagtaattatggactatcttgagaatagttcaaaaaaagctctgtca
gtggaagaattgtcagttgctttacatatgaataaggccaaagattacaaagtttttgtt
aaaactttggcttcactagaagctgaacacttgcttcattttactgctaaagggaaagta
gaattagcagaacaagaggaagcaaaagtagttatcagcgggattttccgagcaaatgcg
gctggatttggttttgtaagtattgatgctgacgaaccagacgtctttattggacgcggg
caaacaggttttgcacttgatggagatgaggttttcattgagattgataagaatgccaac
tccctaaaaggaacggctgccgaggggcatgttgttgaaattatccgtcatgagcttcat
caagtcgttggaacttttgttgctttaaatgatgaagaaaaagagcaaactggactgatt
ggtttcgttaaatctagaaataaaaaaattccttatcgggtatatctgggtgatgaagga
ctcaaaccagaaaataaggcaattgttcgtgtagaaatcacacatcatcctgataaagaa
tttcctcaaaccatgcaaggactggtaacggaaattattggacaggcaaatgaccaaggg
atagatgtgttagaagttttggcttcaatggatattgtatcagaatttccaaaagaggtt
ttggagcaggctgattcagtgccagaagaagtgccagagagtgaaattgcgggtcgagtt
gattatcgtaatgaaattacgttcacaattgacggagctgatgccaaagaccttgatgat
gctgtccatgccaaacgtttaggaaatgggaattatgaattaggtgttcatattgcggat
gtttcccactacgtaacggaaaattcacctttagataaagaagcttacgaacgtggaaca
tcagtctatgttactgacagagtggtaccaatgttgccagagcgtttatcaaatgggatt
tgttcattgaacccacgtttgaatcgcttgactcaatcctgcgtgatggaaattagccca
gaaggtcgagtggttaattatcaaatttcacaatcaattattaagacaactgaaagaatg
acttatgatgcggtcaatcaaatgattgcaggagataaagacacgcttgaaaagtatgct
aaaattgctgattctgtaaaaatcatggttgaaatccatcatattttagaagcgatgcgt
aaacaacgtggagccattgatttcgacacggtagaggcaaaaatcattgtaaatgaaaaa
ggcttacctattgaaattagaaaacgcagtcgtggcattgctgaacgaatgattgaatca
ttcatgcttgaagccaatgaaacggtggccactcattttgaagcacatggcttgccattt
atttatcggattcacgagcaaccaaaagcagatagattacaaagatttattgattttgca
gcaacatttggaatgcaaattgaaggaacctcaaacggaattgatcaaaaagttttacaa
gccttcatgaaaaaaatcaaagggcaaccgggtgaaatggtcttgtcaacgatgctattg
cgcagtatgcaacaagctcgttattcagaaaataatgagggtcactttggtttagctgcc
gaaaattatactcactttacctcacctattcgtcgttatcctgatttattggttcatcgt
ttgattcgtgaaattggtgcgggtaaaattccagcaaatcttttacaaaaatgggaagaa
aaaatcccagaaattgcggagcactctagtcatcgtgaacgtcgagcggttgatgctgaa
cgtgaagttgaaaaaatgaaaaaagccgagttcatggaagaacatgtggacgaagagttt
gaaggaattattgcttcagtcactcgttttggtatgtttattgaacttgaaaatacaatc
gaaggattagttcatatttcaacgttgaagggagattatttcacttatcatgagcgaatg
ttagctttgattggtgaaagaacaggattgacttttaaaattggtcaaccaattaaaatc
aaagtcgtcaaagcggataagatgactggcgaaattgactttgagtaccttccatcagaa
ttagatttgattgataaatcggctaaagctaagaaaaagcctgaatctaaaggtcgcaaa
aaatcaaatcaatcccttaaagttaaatctgtcgcaccaaaagctgctggtaaagctggc
agtaaatcaaaagagggtagaagtactgatggaaaacctgaatttgataagaaaaagaaa
aaatcgggcaaaaaacctttttatagcaaaactgccaaaggtaaatttactgacaaaaaa
gagaatggcaaaaaatttactgatggaagaaaaaagcacacaaaagaccttaaattttga
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