Lactococcus cremoris subsp. cremoris KW2: kw2_1959
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Entry
kw2_1959 CDS
T02848
Name
(GenBank) HD domain-containing protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
llw
Lactococcus cremoris subsp. cremoris KW2
Pathway
llw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
kw2_1959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llw03019
]
kw2_1959
Messenger RNA biogenesis [BR:
llw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
kw2_1959
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
FUT8_N_cat
SID-1_RNA_chan
Motif
Other DBs
NCBI-ProteinID:
AGV73913
LinkDB
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Position
complement(2040363..2041958)
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AA seq
531 aa
AA seq
DB search
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMASAKREAESLKR
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSMDDAREIILSETRDGLTK
EMAQTIRQSEEKAQAEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
LAGEMGENEALAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFDGVETAFALQAGRE
IRVMVKPDKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacattatttctatcgttctcttggtcttattggttgtattagttgtcgcatttatt
ttttatgcccaaaatattaagaaaaataagcaagatgctgaatctctttttaacgaagca
gaaaataaagcaaatgaggtgatggcgagtgctaaacgtgaggcggagtctttgaaaagg
gaggctgaagccttcaaaaaagaagcccgttacacccttcgtgaagaagaacaaaagcaa
cgtcgcgaaatcgaagatgaatttaagcaggaacgtcaggagttaaaggagactgaaaag
cgcctaaaacaacgtgaagaaatcttagaccgtaaggatgataccttaacgaaaaaagaa
gaaaacttagattctaaagaggaaaacctcgttagaaaaactgatacgctcagtaagcga
gaagaacaattagcgcatattgaagaaaagaaacgactggaattggagcgtatttcaaat
ttgagcatggatgatgctcgtgaaattatcttgagtgaaacccgtgatggtttaacaaaa
gagatggctcaaacaattcgtcaaagtgaagaaaaagctcaagcagaagcagataaaaga
gctaaaaatattatttcacttgccattcaacgtgtttcatctgattcggtagctgaacaa
actgtttcagttgtcaatttaccagatgatggcatgaagggtcggattatcggtcgtgaa
ggtcgtaatattcgtacttttgaagctttgactggaattgatgtcatcattgatgatacg
ccagaagcagttgtactttcaggatttgatccaattcgtcgtgaaattgctcgaatgaca
cttgaacaattagttcaagatggtcgaattcatccagctcgcattgaagagttggttgag
aaaaatcgtaaggcccttgatcacaagatgcgtgaatatggggaacaagctgcatttgaa
gtgggcgcgcataatttgcatcctgacttgatgaagattatgggacgtttacacttccgt
acttcttatggtcaaaatgtgcttgaccattctgttgaagtggctcatattgctggtaat
ttagctggtgaaatgggagaaaatgaggctcttgccaaacgtgcaggattcttgcatgat
attggtaaagcacttgaccatgaggttgagggaagccacgttgagattggtacagaactt
gcacgtaagtacaaggaaaatccaattgtaatcaacacaattgctagtcaccatggcgat
acagaaccattaagtaacatcgcagtacttgttgcagcagcagatgcattgtcagcagca
cgtcctggagctcgtcgtgaatcaattgaaaattacatcaaacgtttgaaagacctcgaa
gcaatttcaacaagctttgatggtgtggaaacagcctttgctctgcaagctggacgtgaa
attcgagtaatggttaaaccagataaattgacggatgaccaaatcgtaattttggcgcgt
gatgtgaaaaatcgaatcgaagatgagatggactatcccggtaatattaaagttaccgtt
atccgagaaactcgagcgattgactacgcaaaataa
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