Listeria monocytogenes SLCC2540 (serotype 3b): LMOSLCC2540_1588
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Entry
LMOSLCC2540_1588 CDS
T02242
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lmot
Listeria monocytogenes SLCC2540 (serotype 3b)
Pathway
lmot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LMOSLCC2540_1588 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmot03400
]
LMOSLCC2540_1588 (recD)
Enzymes [BR:
lmot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LMOSLCC2540_1588 (recD)
DNA repair and recombination proteins [BR:
lmot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMOSLCC2540_1588 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
AAA_16
UvrD-helicase
AAA_12
AAA_28
nSTAND3
NTPase_1
Zeta_toxin
AAA_17
AAA
JIP_LZII
SLFN-g3_helicase
TsaE
AAA_18
T2SSE
DEAD
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
CBY76229
LinkDB
All DBs
Position
complement(1570596..1572992)
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AA seq
798 aa
AA seq
DB search
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFF
PALHEQEVYTFYGKMQEHAKFGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAEN
IVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRENQGLEHVMVGLNEYGFGPQL
SMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYM
PSLYYSESGFAYHVKRMLKQTEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALM
SPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDGATFPVLLAAPTGRAAKRMS
ESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPAD
FTKNSADRSFFHCTVNQIGDVVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQ
EIFNPNDTGRRKEVQFGDIKYRVHDKVLQLINQPEKNVFNGDIGEIVSIIYAKENTEKQD
LIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITE
IDPMIGMEGITPEQFMAG
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacaagaatcactcgctctatttaacgatacaccagaagaacttttcatgaag
ggcacgatgttgtccaccattttttacaatgccgaaaacctcttttctgttgtacgaata
ttggtcaaagaaaccaatgcggattgggacgaaaaagatattatcgtaactggctttttc
ccagcgcttcacgagcaagaagtatacactttctacgggaaaatgcaggaacatgctaaa
tttggtcaacagtttaaagcagaccggtttcgtaaggaaatgccacaatcacgagcgggc
ttaattaattatctatccggtgaactttttaaaggcattggtaaagtcactgctgaaaat
attgtggatacgattggggacgatgctatcacaaaaattttatccgatccgagcttgcta
aatacagtacctaagttgccatctggcgcggcagaaagtttgcttgcttcccttagagaa
aatcaagggttggagcatgtgatggtcggattaaacgaatatggctttggtccacaatta
tccatgaaaattttccaggcctataaacaaaatgcgattgaagtgttagagaataatcct
tataaattgattgaggacgtaaaagggataggttttcagcgtgccgatgagcttggacgg
aaactcggtcttggcgggaatcatccagaacggcttcgtgctgggattttatttatgcta
gattcggtttgtatgcaacaaggtcacgtatatatggagcaagaggttctgctcggagaa
gtaacttatttactggaagaaagcgaaggcattcgtattgaccaaaatattttagtggct
caagtagaaaaattagctgaggaacaaaagattattacggaaaatacacgtgtttacatg
ccatcactctattattcagagagcggctttgcatatcacgtgaagcgaatgcttaaacaa
acagaataccaagaacaatttccgcaatccgaatttctgctagctctaggagaattagaa
gaacggattggcgttcactacggagattcgcagcgacaggctttagaacaagctttaatg
tctccgatgctcgtacttactggtggtcccgggacagggaaaacaacagtcattaaaggg
atagtggagctttatgcggaactaaatggtgtgagccttgatccccatgcttacaaagat
ggagcgactttccccgttcttcttgctgctccaactggccgtgccgctaaacggatgtct
gagtcaacagggcttcctgcgatgaccattcaccgtttacttggaatgaatggtcaagaa
caaatggatgatgatgcagaaagactgattgatggacgactgttgatagtggatgagatg
tcaatggtagatatttggcttgctaatcaattattccgtgctttaccagcgcacatgcaa
gtggtacttgttggcgaccaagatcagttgccttcagtcggacctggtcaagtactcaaa
gatattctgcaatctgaacaaattccaactgtagctctttcagatatttaccgccaaaag
gatggttcttccattatcgaaatggcgcattatataaaagaaggcatgttgccagctgat
ttcaccaaaaatagcgccgatcgctccttttttcattgcacggtaaatcaaattggtgat
gtagtcgaacaagtggtaaaaaatgcaaaaaacaaaggatttcgagcaaaagacatccaa
gttttagcaccaatgtatcgtggtcctgcaggcattgatattttaaataaaaaactacaa
gaaattttcaatccaaatgatacagggcgtcgtaaagaagttcaatttggtgacataaag
tatcgcgtgcatgacaaagtactgcaattgattaatcaaccagagaaaaatgtgtttaac
ggtgatattggtgaaattgtgtctattatatacgccaaagaaaataccgaaaaacaagat
ctgattgtcgttcaatttgaccaaacagaggtttcttactataggcaagaatttaatcaa
ttgacccatgcttattgttgttcgatccataaagcgcagggaagtgaatttccgattgtg
attatgccgattgtccgcagttactaccggatgttacggcgcgatttattatacaccgga
gtaacgcgaagtaaacaatttctcattctttgcggggaagaagaagcttttcgaatgggg
atagaacgaattgatgaaaataaacgtaatacaacactctctgaacgtttaatgagcgaa
gatgttttattagaacaaatgacaaataaacgaattctcacagctgaaaatattacggaa
attgatccgatgattggaatggaagggattactccagaacaatttatggcaggataa
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