KEGG   Legionella oakridgensis: Loa_02538Help
Entry
Loa_02538         CDS       T03928                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lok  Legionella oakridgensis
Pathway
lok03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lok00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Loa_02538 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lok03400]
    Loa_02538 (ligD)
Enzymes [BR:lok01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Loa_02538 (ligD)
DNA repair and recombination proteins [BR:lok03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Loa_02538 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AHE68075
UniProt: W0BDX7
LinkDB All DBs
Position
2342262..2344739
Genome map
AA seq 825 aa AA seqDB search
MSLDKYHKKRDFSKTPEPKGKLHDSHHNLYIIQKHDARKLHYDFRIELDGVLKSWVIPKG
PCLDPSVKRLAIHVEDHPLAYGHFEGMIPKGEYGAGIVLLWDEGHWIPLDDDPTTAYQKG
HLRFLLQAKKLNGQWDLIRIQKQEDSWLLIKYEDEYAISLDHYDVIQALPDSVLSNQSID
EIREGSHATWSKQSETANLNQDEANKHYEPIHLDLPISPFPNKVSPQLATLTDKPPQGSQ
WLHEIKFDGYRILAFKNKHKVQLVSRNNKNWTESFQTIAEDIKKLPVDHILLDGEIVLLD
KNGHSNFQLLQNAIHGSGNASFIYYIFDILYYEQWDLQTLPLETRKKLLEQILQFAPPAL
RYSDHILGQGTEAYRHACQFGLEGMLSKRRDGQYINQRSTTWLKTKCKKRQEFVVGGFSK
TREGRKYFSALYLGVYDKNKQLHFCGKVGTGFNDASLQEIFGCLQKLISPKNPFTSRPDE
AKKAIWVKPKLVVEIEFSEWTAQGKLRHPSFKGIRVDKQAKEVIKEKETSFATLEKSLPT
KEIHLSNPQKILYPEDNISKKQLYDYYNKISTYILPYIKDRPLTLVRCPDSYQDCFFQKH
LSPSTNKALHAFSLQHQQKQEDYLIVKDTQGLLALIQMDVLEIHTGGNTIHDIQRPDMIT
FDLDPAPNLAWTQVVHTAFDIKHHLEELDLRSFVKTSGGKGLHVVVPIQPQHEWHIIKQF
AKLFVQFLANKSPDIYTTNLAKIKRTDKIFLDYLRNQQGSTAIAVYSTRAKLHAPIATPV
GWDELSYDFRDTFFTIKTIMDRLTSLKEDPWKEFWQIKQTLKIND
NT seq 2478 nt NT seq  +upstreamnt  +downstreamnt
atgagtctggacaaatatcataaaaaaagagatttcagtaaaacaccggaacctaagggc
aagttgcatgatagtcatcataatttgtacatcattcaaaaacatgatgcccgtaaatta
cattacgattttagaattgaacttgatggcgtacttaaaagctgggttattccaaaagga
ccctgcctggatccctcagtaaaacgacttgccatccacgttgaagatcacccgctggcc
tatggccatttcgaaggaatgattcctaagggtgaatatggtgcaggaattgtcttgttg
tgggatgaggggcattggattcctttagatgacgatcccaccaccgcttatcaaaaagga
catttgcgctttcttttgcaagcaaaaaaattaaatggtcaatgggatttaatccgcatt
cagaaacaggaagattcatggctattgatcaaatacgaggatgagtatgcaatctccctt
gatcattatgatgttattcaagccttaccagacagtgttttatcaaatcaatctatagat
gaaatcagagaaggtagccatgccacctggtctaagcaatcggaaacagccaatttaaac
caagacgaggccaataagcactatgaacctattcatcttgatttaccaatctcccctttt
ccgaacaaagtttcaccgcaattagccaccttaacagataaaccaccgcaaggcagtcaa
tggctgcatgaaattaaatttgatggctatcgaattcttgcttttaaaaataaacataag
gtgcagcttgtctcaagaaacaataaaaactggactgaatcatttcaaaccattgctgaa
gacattaaaaaactcccggtagatcatattcttcttgatggcgaaattgttctattggat
aaaaacggtcattctaattttcagttattacaaaatgcgattcatggttccgggaacgct
tcttttatttattatatttttgatattctttattatgaacagtgggacctacaaacttta
cccttagaaaccagaaaaaaattgcttgaacaaatactgcaatttgctcctccagcacta
cgttacagcgatcacatccttggtcaaggaacagaagcgtatagacatgcttgtcaattt
ggcctggaaggtatgttatcaaaacgacgcgatggacagtatatcaatcaacgctcaaca
acctggctgaaaacaaaatgtaaaaaacgacaggagtttgtcgttggtggtttttcaaaa
acacgcgaaggcagaaaatatttcagtgccttatatcttggagtttatgataaaaataaa
caattacatttttgcgggaaagtgggtacgggatttaatgacgcttcattacaagaaata
tttggctgcttacaaaaactcatttcccctaaaaacccatttacttcacgtcctgacgag
gccaaaaaagccatctgggttaagcctaaactggtcgttgaaatcgaatttagtgaatgg
acagcacaaggaaaattgcgccatccaagctttaaaggaatacgtgtcgataaacaagcc
aaggaggtcattaaagagaaagaaacgtcctttgcaaccctagagaaatctctgccaact
aaagaaatccatctttctaatccacaaaaaattttatacccggaagataacatcagcaaa
aagcaactgtatgactattataataaaataagcacttatatcttgccttacattaaagac
agaccgcttacactggtacgctgtcctgattcctatcaggactgcttctttcaaaagcac
cttagtccatcgaccaataaagcattgcatgctttttctttgcaacatcaacaaaaacaa
gaagattacttgatagtaaaagacacccaaggtttacttgcattaatacaaatggatgtc
ttagaaatacataccggaggaaacacaattcatgatattcagcggccagacatgattacc
tttgatttggatccagctccaaatcttgcatggacccaagtagttcatacagcctttgat
attaaacatcatttggaagagctggatttacgttcctttgtcaaaacaagcggcgggaaa
ggcctacatgtggtcgtacccattcagccacagcacgaatggcatatcatcaaacaattt
gccaagctttttgtacagtttttagcaaataaaagcccggatatttatacaaccaaccta
gcaaaaataaaaagaactgataaaatttttcttgattatcttagaaatcaacaaggctca
acagccatcgcggtttattcaactcgggcaaaattacatgccccaattgccacaccggtg
ggctgggatgaattatcctacgatttccgggatacattttttactattaaaaccatcatg
gatcgattaacttctttaaaagaagatccttggaaagagttctggcaaataaagcaaacc
ttaaaaattaatgattag

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