Lactiplantibacillus plantarum WCFS1: lp_0787
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Entry
lp_0787 CDS
T00115
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase, sigma factor 54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Pathway
lpl02020
Two-component system
lpl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
lp_0787 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
lp_0787 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpl03021
]
lp_0787 (rpoN)
Transcription machinery [BR:
lpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
lp_0787 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Motif
Other DBs
NCBI-ProteinID:
CCC78247
UniProt:
F9UM08
LinkDB
All DBs
Position
722326..723663
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AA seq
445 aa
AA seq
DB search
MALGPGFRQQQRQSQKLAMTQRLQQSIQMLQFNVEELRDFLTQKALENPLIDVDTNWNNN
HASLNAAKNVTTKADFIERVSTSNQHSLFEYLLDQIHLTMRDTHLRQIVLYLIEYVDVNG
YLRIDERQVRQETKATPIELLDAITLLQQLDPPGVGARSLQEALMLQTENDDHAPNLAYI
VLEESFDELVNRQWDLLAKKYQVTLADISSIYDYVRTLTPVPGAAIGQETTGYIFPDLVV
TNQGGQLALRTASMAQPVVKFRSRYYQQMGQHDDQEVTEYLKEKKSEYDWIANSLQQREA
TIFRVGTAIIERQADFFLEKTTDLRPLLLRDVAQQLKVHESTISRSINGKYIQTDFGMFE
LKRFFTKAVSKRPTGGKIVSADSVQHRIVTLIEQENKEKPLSDQKIVQILNAENVELSRR
TVAKYRENLNIPSSSRRKQYLRTER
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcactgggaccaggatttcgccagcaacagcggcaatcacagaagttagcgatgacc
cagcgactacaacaatccattcagatgttgcagtttaatgtggaagaactaagagatttt
ctaacgcaaaaagcattagaaaacccattgatcgatgtggatacaaattggaataataat
cacgccagtttgaacgcagccaaaaatgtaaccactaaggcggatttcattgagcgtgtg
tcgacctctaatcagcattcgttatttgaatacttgttggatcagattcacctaacgatg
cgtgatacccatttgcgtcagattgtcctttatttaattgagtacgttgacgtgaatggt
tatttgcggattgatgagaggcaggttcggcaagaaactaaggcaacaccaattgagttg
ttggatgcaattaccttattacaacaacttgatccgccgggtgttggggcccggagcttg
caagaagcgctgatgttgcagacagaaaatgatgaccatgcaccgaacttagcctatatt
gtcttagaagaaagttttgacgagctggttaatcgacaatgggacttgttggctaagaag
tatcaggtgacgcttgcggacatttcaagtatttatgattatgtgcgaacactaacaccc
gtacccggtgcggcaatcgggcaggagacgaccgggtacatctttcccgatttagtggtg
acgaatcagggaggccagctggcattgcgaaccgcatccatggctcaaccggtggttaaa
ttccgcagtcggtattatcagcagatggggcagcatgatgatcaggaagttacggaatat
ttgaaagaaaagaaaagtgagtatgactggattgctaacagtttgcagcaacgcgaggca
accatttttcgagtgggaacggccattatcgagcgtcaagcagacttcttcttggaaaaa
acgacggatttacggccactattgttacgagatgttgcccaacagttaaaagtgcatgaa
tcaacaatcagtcgaagtattaatggaaagtacattcaaacggacttcggtatgtttgaa
cttaaacgtttctttaccaaagcggtcagtaaacgtcccactggtggcaaaatcgtttcg
gccgacagtgttcaacaccgaattgtgaccttgatcgaacaggaaaataaagaaaaaccg
ctttcagaccaaaaaattgttcagattcttaatgcggaaaatgtcgaactttctcggcgg
acagtggcgaaatatcgcgaaaatcttaatattccgtcgtcatcaaggcgaaaacaatac
ttgagaaccgaacgataa
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