Lactiplantibacillus plantarum WCFS1: lp_1062
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Entry
lp_1062 CDS
T00115
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Pathway
lpl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lp_1062 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpl03021
]
lp_1062 (rpoA)
03400 DNA repair and recombination proteins [BR:
lpl03400
]
lp_1062 (rpoA)
Enzymes [BR:
lpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lp_1062 (rpoA)
Transcription machinery [BR:
lpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lp_1062 (rpoA)
DNA repair and recombination proteins [BR:
lpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lp_1062 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CCC78470
UniProt:
Q88XW0
LinkDB
All DBs
Position
965520..966464
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AA seq
314 aa
AA seq
DB search
MIEFEKPNIHKIDENDNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDGVL
HEFSTIEGVTEDVTAIILNVKKIALKLESDETKTLEIDVKGPANVTAGDIIGDADVEVLN
PDLPICTVADGAHFHMRMTANTGRGYVSAEDNKHREDDMPIGVLAVDSLYSPIERVNYQV
ENTRVGQRDDFDKLTLDVWTNGSITPSEAISLSAKILTDHLSIFVNLTDEAKNTDVMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVK
AKLADLGLSLRKED
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatttgaaaaacctaacattcataaaattgatgaaaacgacaactatggtaag
tttgttgtagaaccgcttgaacgcggttatggtacaactttagggaattcacttcgtcgg
attcttctttcttctttacctggcgctgctgttactagtattcaaattgatggtgttctt
catgaattttcaacgattgagggcgtaacggaagacgttacggcaattatcttgaatgtt
aagaagattgcacttaagttggaatcagacgaaaccaagacgttggaaatcgacgttaag
ggtcctgctaacgttactgccggtgatatcattggcgatgcggacgtagaagtcttgaat
ccagacttaccaatttgtaccgtagcagacggggcacacttccatatgcgtatgaccgca
aatactggtcgtggttatgtttccgctgaggataacaaacatcgtgaagatgacatgcca
attggcgttttagctgttgattcattgtattctccaatcgaacgtgtcaactaccaagtt
gaaaacacgcgggttggtcaacgtgatgatttcgataagttaaccttagacgtttggaca
aatggttcaatcactccaagtgaagccattagtctatcagccaaaatcctgactgatcac
ctttcaatcttcgtaaatctcactgatgaagctaaaaacactgatgtgatggtcgagaag
gaagaaacgcataaggaaaagatgttagaaatgacgattgaagagttagatctctccgtc
cgttcatacaattgcttgaagcgtgctggcatcaacacggtccaagaattaactaacaaa
actgaagctgatatgatgaaggttcgcaaccttggacgcaagtcactcgaggaagttaag
gcaaaattagctgaccttgggttatcattacgcaaagaagactaa
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