Lactiplantibacillus plantarum WCFS1: lp_2158
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Entry
lp_2158 CDS
T00115
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpl
Lactiplantibacillus plantarum WCFS1
Pathway
lpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lp_2158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpl03019
]
lp_2158
Messenger RNA biogenesis [BR:
lpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lp_2158
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
CCC79386
UniProt:
F9UQ97
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Position
1949948..1951624
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AA seq
558 aa
AA seq
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MKRLNVKNNETAVFAVGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDELLGIDYVIPDYS
YLVANQQKIKALVITHGHEDHIGGIPFLLKQINVPIYAGPLALALIKGKLEEHGLLKTTE
LHEINEDTVLKFRKTRVSFFRTTHSIPDTLGIAVQTPPGTIVETGDYKFDLTPITNQPPN
LQKMAHLGERGVLALMSDSTNAERPIWTKSERWVAQSIRHIFEQVEGRIIFATFASNISR
IQEAAQVALEHHRKIAVFGRSMEAAIVNGRELGYLNIPDEAIVDANDLRSLPANKVMILC
TGSQGEPMAALSRIANGTHRQISIEPGDTVIFSSSPIPGNTLSVNHVINELEEAGANVIH
GKVNNIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFILE
NGDVLAFTKDSARVAGHFGAGDVYVDGSGIGDIGNVVLRDRQVLSEEGLVVVVATINLNK
KEIQAGPDILSRGFVYMRESGDLINEARRHVFRTIRRKMKSDKATEATIRNAIIDDLQSF
LFDKTERHPMILPMLIMN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggttaaacgtcaaaaataacgaaaccgctgtttttgcagtcggcggtttggga
gaaattgggaaaaatacctatggtatccaatttcaagatgagattattctgattgatgcc
ggaattaaattccctgaagatgaacttctcggaattgattacgttattccagactattct
tatctagttgcaaatcagcaaaaaataaaagctttagtgattacgcacggtcatgaagat
catatcggtgggattccattcctattaaaacagatcaacgtgccaatctatgccggcccc
ctagccttagccttgattaagggtaagttagaggaacacgggttattaaaaacaactgaa
ttacacgagatcaatgaagatacggtgctcaagttccgtaagacgcgtgtctcgttcttc
agaacgacccattcaattcctgatacactgggaatcgccgttcaaacaccacctggcacg
attgtagagaccggagactataagttcgatctgacaccaattactaaccagccgccgaac
cttcaaaagatggcgcatctcggtgaacgtggtgtcttggcgctaatgtcagacagtact
aacgccgaacggccaatctggacgaaatctgaacggtgggtggcgcaatcaattcgccac
atttttgaacaagttgaaggtcgaatcatctttgctaccttcgcttctaacatctcgcgg
attcaagaggcagcgcaggtcgcccttgaacatcatcgtaaaatcgcggtatttgggcgt
agtatggaagcagctatcgtcaacggacgtgaattaggctatttaaacatccctgacgaa
gccatcgttgatgctaacgatttacgctccctccccgccaataaagtcatgattctatgt
actggttcccaaggtgaaccaatggcggcgctctcgcgaattgccaacggtactcatcgc
cagatttctattgaacctggcgacaccgtgatcttttcaagttcaccgattcctggtaat
acgttaagtgttaaccacgtaatcaacgaactcgaagaagccggtgcgaatgtcattcat
ggtaaagtcaataacattcatacatctggtcatggtggtcaggaagaacagaaactgatg
ctacggctgatgaaaccaaagttctttatgccgattcacggtgaatatcgaatgttgaag
attcacaccgaactggccgaacaatgtggtgtgccactagaccatagttttatccttgaa
aatggtgatgtgcttgcctttacgaaggattctgcccgggttgccggtcactttggtgct
ggcgatgtctatgttgatggttctggaatcggcgatattggcaacgttgtgttacgcgac
cgccaagtgctttcggaagaaggcttggttgttgtcgttgctaccatcaatttgaacaaa
aaagagatccaagctggtccagatattctgtcacgtggttttgtctacatgcgcgagtct
ggcgatctaattaacgaagcccggcggcatgtcttccgtacgatccggcgcaaaatgaag
tcggataaagcaaccgaagcgactatccgcaatgcgattattgacgacctgcagagtttc
ttatttgataagactgaacggcacccaatgattctgccaatgttgattatgaactaa
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