KEGG   Lactiplantibacillus plantarum ST-III: LPST_C0448
Entry
LPST_C0448        CDS       T01324                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lps  Lactiplantibacillus plantarum ST-III
Pathway
lps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LPST_C0448 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lps03400]
    LPST_C0448 (mfd)
Enzymes [BR:lps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LPST_C0448 (mfd)
DNA repair and recombination proteins [BR:lps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      LPST_C0448 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII UB2H SNF2-rel_dom AAA_22 RecG_dom3_C MFD_D3 IstB_IS21
Other DBs
NCBI-ProteinID: ADN97671
LinkDB
Position
472117..475644
AA seq 1175 aa
MDIETIVEQTPDFQTILAGISPRSRQLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFH
ASQLVDDLTSLLDEDQVFLFPAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSV
AGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVD
IYPLDADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAGAQR
LKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRKTSIFDYVAA
DGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGNDIRDLLRDDQHAQLLI
SLFQKGIGNVKLAQVTNVRTRPMQEFFGQLPALKTELDRWHKLKQTVVLMVSEAERLTKV
SDTLDDFEIEAVMTKATNLQPGAVQIVQGSLQNGFEFPDGKLVIVTEQEMFKKVAKKCPR
RQTLANAERLKSYTDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAYQNNAKIFI
PVTQLNLVQKYVSSESKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY
AFPPDDSYQDDFDNDFPYPETPDQIRSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHYETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKS
GEIDIVVGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKALKASVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNGQVFYLHNRVHD
IDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVN
TLFVENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAKKRGQAAKVKTDATVEL
GIEAYLPTSYIEDERQKIEIYKRIRQLENNDQYMEVQDDLMDRFGDYPVEVAGLLAVGKL
KLLADDALIEKIQRDDSELHLTLSKQGTAKLDTKDIFKALAKTKLKATVGIDDDKMKVKL
VIQPKMQQDEWLAQLTQFVEQLSLILAEDDVASAS
NT seq 3528 nt   +upstreamnt  +downstreamnt
atggatattgaaacgattgttgagcaaacgcccgactttcaaacaattttagcaggtatc
agcccgcgtagtcggcaactaatcaccgggttgaacggttcggcacgaacggtttattta
agcgcgctatttcaccaattaacgcattcattactgatcgtgaccgataacggttttcac
gcgagtcagctagtggatgatttaacgagtctcttagatgaagaccaagtttttttattc
ccagctgaagaaatgattgcgacggaggttgcgacaagttcaccagagtcacgagcgcaa
cgggtccaggctttaaacgccttattgcgtgacagtccggcagtggtcgtgacctcggtt
gcaggtgcccggcggttcttgccgcccgtcgcacaatttcaagcagccacgttaccggta
gccgttggtcaagatattgatttggaagacttgcagcggcaactacacgacatgggttac
gttaaggaaaagttagtcgcacgcccaggagattttgcggtacggggttcaatcgtggat
atttacccgttagatgcggactaccctttacgactggacttctttgatactgaagttgat
acactgaagtattttgacccggaaacgcaacgttcggtggaaaacttggatgagtatacg
attttaccagctaccgactttatcctaacatcagctatgctgcaggccggggcacagcgt
cttaaaacggcgattgcggctgaaaataagaaactcaagccagccgaacgccagactttg
gccgataatttagcacaacctttagctgacatggaaaaaggaattatcggaaacgattta
ttattatatggcgattatttatacgaccggaaaacgagtatttttgactatgtggccgct
gacgggctcgttatcttcgaagaatattcgcgtttgcttgatagtgagcagcagttatta
acgcaagaagctgactgggttacggaccaattggcacatcaccgggtgctggcaactgcg
agttacggcaatgatattcgggatttgctccgggatgaccaacatgcacaactcttgatt
tcgctgtttcaaaagggcatcggcaacgtcaaactagcgcaagtaactaacgtgcgcaca
cgcccgatgcaggaattctttgggcagctcccagcgttgaagaccgaactggatcggtgg
cataagcttaaacagacggtggtcttgatggtatcagaggctgagcgtctgacaaaggtc
agtgatacacttgatgattttgaaatcgaagcggtcatgactaaggccactaatttacaa
ccgggggcggttcaaatcgtgcaaggtagcttgcaaaatggatttgagtttccggatggt
aaattagtcatcgtaaccgagcaagaaatgttcaagaaggtggctaagaagtgtccacgt
cgtcagaccttggctaatgccgaacggttgaagagctatacggatctcaaacccggcgat
tacgtcgtgcacgtcaatcacgggatcggaaagtacgttggtatggagacgctggaagtt
gatggtgtccatcaagactacattacgattgcgtatcaaaataatgcgaagatctttatt
cccgtgacccagttaaacctagttcaaaagtacgtttcgtcagaatcaaagacgccacgc
atcaataagttgggtggtaccgaatggacgaaagcgaagcgcaaagttgcggcgaaaatt
gaagatatcgcggatgaactagtcgacctgtatgccaagcgagaggcggagaaaggttac
gcctttccaccggacgatagttatcaagatgatttcgataacgattttccgtacccagag
acgccggatcaaattcgtagtattaatgaaatcaagcatgatatggaacgaccgaaaccg
atggaccgcctattggtcggcgatgttggttatgggaagacggaagtcgcgttgcgggcc
gcgtttaaggcgattgaggccggcaaacaagtggcctttctagtgccaacgaccatttta
gctcagcaacattatgaaacgatgctgaatcggtttgaaggctacccgattaacgttggc
atgctgtcacgattcagaacaactaaggaaatgaaagagacggtccaacagttaaagagt
ggtgaaattgacatcgtggttggtacgcaccgcttactgtctaaggacgtcgcgtttgct
gatctgggcctgctcattattgatgaggaacaacggtttggggtcaagcacaaggaacga
ctgaaggccttgaaggctagtgtggatgtcttgacgttaacggcaacgccgattccgcga
acattacacatgtcgatgctcggtgtacgggacttatcagtgattgagacgccgccaacg
aaccgttatccgatccaaacgtacgtcatggaacagaattttggcgtcattaaagaggga
attgaacgagaaatgcaacgtaatgggcaggtcttttatttgcataaccgggttcatgat
attgataaagtcgttgcacagatcaaagacttggttcccgacgcggcggtggcccatatt
gatggtcagatgcctgagtcacaactcgaagggattctctacgatttcattcggggtgag
tacgatgtgttagtgacaacgacgatcattgagaccggggttgatattccaaacgtcaac
accttatttgtggaaaatgctgaccggatgggactgtcacagctataccagttgcgtggc
cggattggtcggagtagtcgggtcgcctatgcttactttacttatcagcaaaataaagtt
ttgacagaagttggtgagaaacggttacaggccatcaaggactttacggaacttggatct
ggctttaaaatcgcgatgcgcgacttgtcgattcggggtgctggtaacttgttaggcaag
caacagcacggctttattgactcagttggttatgacctctatacccagatgttgtcagaa
gcagtggcgaagaagcgtggtcaggcggctaaagttaagaccgatgccacggtcgaactt
ggaatcgaagcctacttgccgaccagctatattgaagatgaacggcaaaagatcgaaatt
tataaacggattcgccagctggagaataatgatcagtacatggaagttcaggatgattta
atggatcggtttggtgattatccggtagaagtcgctggactattagcagtaggtaagctg
aagttattggcggatgacgcgctgattgagaagattcagcgtgacgatagtgagctacac
ctaacgttatccaaacaagggacggctaagctagatactaaagatatttttaaggccttg
gcaaaaacaaaattaaaagcgacagttggaattgatgatgataaaatgaaggttaaatta
gtcattcagccaaagatgcaacaggatgagtggctggcgcaactaacacagtttgtcgaa
caactgagtttgatcttagccgaagacgatgtcgctagtgcgtcttag

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