Lactiplantibacillus plantarum ST-III: LPST_C0448
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Entry
LPST_C0448 CDS
T01324
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lps
Lactiplantibacillus plantarum ST-III
Pathway
lps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPST_C0448 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lps03400
]
LPST_C0448 (mfd)
Enzymes [BR:
lps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPST_C0448 (mfd)
DNA repair and recombination proteins [BR:
lps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPST_C0448 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SNF2-rel_dom
AAA_22
RecG_dom3_C
MFD_D3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADN97671
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All DBs
Position
472117..475644
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AA seq
1175 aa
AA seq
DB search
MDIETIVEQTPDFQTILAGISPRSRQLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFH
ASQLVDDLTSLLDEDQVFLFPAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSV
AGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVD
IYPLDADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAGAQR
LKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRKTSIFDYVAA
DGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGNDIRDLLRDDQHAQLLI
SLFQKGIGNVKLAQVTNVRTRPMQEFFGQLPALKTELDRWHKLKQTVVLMVSEAERLTKV
SDTLDDFEIEAVMTKATNLQPGAVQIVQGSLQNGFEFPDGKLVIVTEQEMFKKVAKKCPR
RQTLANAERLKSYTDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAYQNNAKIFI
PVTQLNLVQKYVSSESKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY
AFPPDDSYQDDFDNDFPYPETPDQIRSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHYETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKS
GEIDIVVGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKALKASVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNGQVFYLHNRVHD
IDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVN
TLFVENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAKKRGQAAKVKTDATVEL
GIEAYLPTSYIEDERQKIEIYKRIRQLENNDQYMEVQDDLMDRFGDYPVEVAGLLAVGKL
KLLADDALIEKIQRDDSELHLTLSKQGTAKLDTKDIFKALAKTKLKATVGIDDDKMKVKL
VIQPKMQQDEWLAQLTQFVEQLSLILAEDDVASAS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaaacgattgttgagcaaacgcccgactttcaaacaattttagcaggtatc
agcccgcgtagtcggcaactaatcaccgggttgaacggttcggcacgaacggtttattta
agcgcgctatttcaccaattaacgcattcattactgatcgtgaccgataacggttttcac
gcgagtcagctagtggatgatttaacgagtctcttagatgaagaccaagtttttttattc
ccagctgaagaaatgattgcgacggaggttgcgacaagttcaccagagtcacgagcgcaa
cgggtccaggctttaaacgccttattgcgtgacagtccggcagtggtcgtgacctcggtt
gcaggtgcccggcggttcttgccgcccgtcgcacaatttcaagcagccacgttaccggta
gccgttggtcaagatattgatttggaagacttgcagcggcaactacacgacatgggttac
gttaaggaaaagttagtcgcacgcccaggagattttgcggtacggggttcaatcgtggat
atttacccgttagatgcggactaccctttacgactggacttctttgatactgaagttgat
acactgaagtattttgacccggaaacgcaacgttcggtggaaaacttggatgagtatacg
attttaccagctaccgactttatcctaacatcagctatgctgcaggccggggcacagcgt
cttaaaacggcgattgcggctgaaaataagaaactcaagccagccgaacgccagactttg
gccgataatttagcacaacctttagctgacatggaaaaaggaattatcggaaacgattta
ttattatatggcgattatttatacgaccggaaaacgagtatttttgactatgtggccgct
gacgggctcgttatcttcgaagaatattcgcgtttgcttgatagtgagcagcagttatta
acgcaagaagctgactgggttacggaccaattggcacatcaccgggtgctggcaactgcg
agttacggcaatgatattcgggatttgctccgggatgaccaacatgcacaactcttgatt
tcgctgtttcaaaagggcatcggcaacgtcaaactagcgcaagtaactaacgtgcgcaca
cgcccgatgcaggaattctttgggcagctcccagcgttgaagaccgaactggatcggtgg
cataagcttaaacagacggtggtcttgatggtatcagaggctgagcgtctgacaaaggtc
agtgatacacttgatgattttgaaatcgaagcggtcatgactaaggccactaatttacaa
ccgggggcggttcaaatcgtgcaaggtagcttgcaaaatggatttgagtttccggatggt
aaattagtcatcgtaaccgagcaagaaatgttcaagaaggtggctaagaagtgtccacgt
cgtcagaccttggctaatgccgaacggttgaagagctatacggatctcaaacccggcgat
tacgtcgtgcacgtcaatcacgggatcggaaagtacgttggtatggagacgctggaagtt
gatggtgtccatcaagactacattacgattgcgtatcaaaataatgcgaagatctttatt
cccgtgacccagttaaacctagttcaaaagtacgtttcgtcagaatcaaagacgccacgc
atcaataagttgggtggtaccgaatggacgaaagcgaagcgcaaagttgcggcgaaaatt
gaagatatcgcggatgaactagtcgacctgtatgccaagcgagaggcggagaaaggttac
gcctttccaccggacgatagttatcaagatgatttcgataacgattttccgtacccagag
acgccggatcaaattcgtagtattaatgaaatcaagcatgatatggaacgaccgaaaccg
atggaccgcctattggtcggcgatgttggttatgggaagacggaagtcgcgttgcgggcc
gcgtttaaggcgattgaggccggcaaacaagtggcctttctagtgccaacgaccatttta
gctcagcaacattatgaaacgatgctgaatcggtttgaaggctacccgattaacgttggc
atgctgtcacgattcagaacaactaaggaaatgaaagagacggtccaacagttaaagagt
ggtgaaattgacatcgtggttggtacgcaccgcttactgtctaaggacgtcgcgtttgct
gatctgggcctgctcattattgatgaggaacaacggtttggggtcaagcacaaggaacga
ctgaaggccttgaaggctagtgtggatgtcttgacgttaacggcaacgccgattccgcga
acattacacatgtcgatgctcggtgtacgggacttatcagtgattgagacgccgccaacg
aaccgttatccgatccaaacgtacgtcatggaacagaattttggcgtcattaaagaggga
attgaacgagaaatgcaacgtaatgggcaggtcttttatttgcataaccgggttcatgat
attgataaagtcgttgcacagatcaaagacttggttcccgacgcggcggtggcccatatt
gatggtcagatgcctgagtcacaactcgaagggattctctacgatttcattcggggtgag
tacgatgtgttagtgacaacgacgatcattgagaccggggttgatattccaaacgtcaac
accttatttgtggaaaatgctgaccggatgggactgtcacagctataccagttgcgtggc
cggattggtcggagtagtcgggtcgcctatgcttactttacttatcagcaaaataaagtt
ttgacagaagttggtgagaaacggttacaggccatcaaggactttacggaacttggatct
ggctttaaaatcgcgatgcgcgacttgtcgattcggggtgctggtaacttgttaggcaag
caacagcacggctttattgactcagttggttatgacctctatacccagatgttgtcagaa
gcagtggcgaagaagcgtggtcaggcggctaaagttaagaccgatgccacggtcgaactt
ggaatcgaagcctacttgccgaccagctatattgaagatgaacggcaaaagatcgaaatt
tataaacggattcgccagctggagaataatgatcagtacatggaagttcaggatgattta
atggatcggtttggtgattatccggtagaagtcgctggactattagcagtaggtaagctg
aagttattggcggatgacgcgctgattgagaagattcagcgtgacgatagtgagctacac
ctaacgttatccaaacaagggacggctaagctagatactaaagatatttttaaggccttg
gcaaaaacaaaattaaaagcgacagttggaattgatgatgataaaatgaaggttaaatta
gtcattcagccaaagatgcaacaggatgagtggctggcgcaactaacacagtttgtcgaa
caactgagtttgatcttagccgaagacgatgtcgctagtgcgtcttag
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