Lactobacillus paragasseri: LpgJCM5343_10990
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Entry
LpgJCM5343_10990 CDS
T05840
Symbol
uvrC
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LpgJCM5343_10990 (uvrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_10990 (uvrC)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LpgJCM5343_10990 (uvrC)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH_2
5_3_exonuc
PB2_cap-binding
GA-like
Motif
Other DBs
NCBI-ProteinID:
BBD48746
LinkDB
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Position
complement(1150381..1152183)
Genome browser
AA seq
600 aa
AA seq
DB search
MATEHIENKLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRRAELVRE
IRDFDIITVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITNERDPQTRLTSIVH
KDHGYYFGPYPNVYAAQATLKFIQKVWPLRRCSGHQGRPCLYYHMGQCLGACFKEVPKSA
YDKQIRKIKRFLNGDISQVKQDLTEKMTQASMDLEFERAAEFRDQLKYIEQTVEKQKIIS
NDHTQRDIFNFYVDKSWISIQVFFLRQAKLLRRETRLFPLTDTNEPQDAFVSFIAQFYGQ
RNRVLPKEVLVPAGIHNEALAEVLGVTVRTPQRGQKRALLEMAHDNAKLKLDEKFRLLEL
GNRKTKGAQKEIFDALGLPYGHRIESFDHSHIQGADPVSALVVFTDGEPDKHEYRKYKLK
GEVEHQNAADEVGNTREVVRRRYSRLLKEHKKMPDLILMDGGQIQVDACLDVLRNELNVN
IPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEGFYLMTRIQDEVHRFAITFHRR
THAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEASIEELRDAGLTLPQAQTVKLSL
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggaacacattgaaaataaactaaagcttttaccagacaaaccaggttgttat
ttaatgaaagatataaatggcaatgtgatttatgtgggaaagtctaagaatttaaagaac
cgcgttcgttcctattttaagagtaagcaagttggtcggcgagctgaacttgttcgtgaa
attcgtgattttgacattattacagtttcatctgataaagaatcttttttactagaaatt
actttaattaaaaaatatcaaccatactataacgtccaactaaaacaaggtacgggttac
ccatatattgaaattactaacgaaagggatccgcaaactcgtttaacatcaattgttcat
aaagatcatggctactattttggaccgtatccaaatgtttatgcggctcaagcaacgctt
aagtttatccaaaaggtttggccgctaagaagatgttcaggtcatcagggacgcccgtgt
ctttactatcatatgggacaatgtctcggtgcatgctttaaagaggtcccaaagagcgct
tatgacaagcaaataagaaaaataaagcgtttcttaaacggcgatatttcacaagttaag
caagacttaactgaaaaaatgactcaggcttcaatggatttggagtttgagcgtgcagct
gaatttagagatcagttaaaatatattgaacaaaccgttgaaaaacaaaaaattatttct
aatgatcatacccagagagatatttttaacttttatgttgataaatcatggatttcgatt
caagtatttttcttaagacaggctaaattattacgtcgggaaactagattatttccatta
acagatactaatgaaccacaggatgcatttgtatcttttattgcgcaattctatggccaa
agaaatcgtgttttacccaaagaagttttggtcccagctggtattcataatgaagcatta
gctgaagttttaggcgtaactgtaagaactccgcaaagaggtcaaaaacgtgccttacta
gagatggcacatgacaatgctaagttgaagttagatgaaaaattccgcttgttagaatta
ggtaatagaaaaactaaaggagcacaaaaagagatttttgatgctttgggtttaccatat
ggccatcgaattgaaagtttcgaccactctcatatccaaggagctgatcctgtttctgcc
ttggttgtgtttactgatggtgaaccagataaacatgaatatcggaagtataaattgaaa
ggcgaagtagaacaccaaaatgcggctgacgaagtaggaaatacacgtgaagtggtgaga
aggcgttatagtcgtcttttgaaagaacacaagaaaatgcctgacctgattttaatggat
ggtggtcaaattcaggttgatgcttgcttagatgtgttgagaaatgaattaaatgtcaat
attcctgtagcagggatggttaaagacgaccatcaccgcactaatcacttgatttttggt
gatcctactcaaggagaagaattaaagctaattcctttaaatccgaaatcagaaggattc
tacttaatgacaagaattcaggatgaagttcaccgctttgcaattacttttcatagaaga
actcatgctaaaaatgcactttcaagtaagttagatgagataaaagggattggtcctaag
tctagaaataagcttttgcgaaagtttggatctttaaagaaaattaaagaagcttcaatc
gaagaattacgagatgcgggtttaactcttccacaagcacaaactgttaaattgagtttg
taa
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