Lacticaseibacillus rhamnosus ATCC 8530: LRHK_1057
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Entry
LRHK_1057 CDS
T01961
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lra
Lacticaseibacillus rhamnosus ATCC 8530
Pathway
lra03030
DNA replication
lra03410
Base excision repair
lra03420
Nucleotide excision repair
lra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRHK_1057 (ligA)
03410 Base excision repair
LRHK_1057 (ligA)
03420 Nucleotide excision repair
LRHK_1057 (ligA)
03430 Mismatch repair
LRHK_1057 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lra03032
]
LRHK_1057 (ligA)
03400 DNA repair and recombination proteins [BR:
lra03400
]
LRHK_1057 (ligA)
Enzymes [BR:
lra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRHK_1057 (ligA)
DNA replication proteins [BR:
lra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRHK_1057 (ligA)
DNA repair and recombination proteins [BR:
lra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRHK_1057 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRHK_1057 (ligA)
MMR (mismatch excision repair)
DNA ligase
LRHK_1057 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRHK_1057 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_8
HHH
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AER63846
LinkDB
All DBs
Position
1005704..1007728
Genome browser
AA seq
674 aa
AA seq
DB search
MLSKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFP
KLVTPDSPTQQVGDVINSDFAKVRHPIPMLSMGDVFSFEELSEWDARMQANVGHAVDYNV
ELKIDGLALSLIYENGRLVQGSTRGDGNIGEDVTKNVLTIASVPKTLKRPLSLEVRGECY
MPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDADRFNV
KTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTPPAPIPEECPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIIAQLQAKKLVTDVADLYRL
TATDLEKLDKFKEKSINNLLNAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGSLDE
LMAADQDQVAAIPNIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSF
VSGKTVVITGKFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNV
PIMDETALLTNLKN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttaagtaaaccagctgctcaatttacacttgaagaagccgaagccgagattgccaag
cttcgaaaacagttaaatcaatggcgcttggagtattacaccaaagacgctccaacggtc
acagataatgtttatgatgatcattatcgtgacttgcaagcgttagaagccgcttttcca
aaactggtgacgcctgattcaccgacgcagcaagttggcgatgtgattaattcggatttt
gccaaagttcggcacccgattcccatgctgtcaatgggcgatgtcttttcatttgaagaa
cttagcgaatgggatgcgcggatgcaggctaatgtggggcatgcggttgattacaatgtt
gaattgaagattgacggccttgctttgtcgcttatttatgaaaatggccgcttagtgcaa
ggctccacccgtggcgatggtaatatcggcgaagatgtgacgaaaaatgttttaaccatt
gcttcggtgcctaagactttgaagcggccactatcgcttgaagtgcgcggtgagtgctat
atgcctaaagctgcgtttgccaaattaaacgcacgcaaggaggcagatggggacacgcca
tttgccaacccgcgtaatgctgcggccggttcgttgcgacagctcaaccctaaaatcact
gccgggcgtgaattggatacgtttatttacacgttaattgacgccgatcggtttaatgtc
aaaacccagcatgaggcgatcgcatttatgcaggatcttgggttcacaaccaatccaagt
tccgaagtggctagtgatatgcaagcgatcgatgcttatataacgaaatacaccagtgat
cgggatgctttgccgtatggaatcgatgggattgtgctaaaggtcaatgacttggctttg
caggcccaactcggaaacaccgtcaaagtaccgcggtgggaaattgcctataagtttccc
ccggaagaagccaaaacggtgattcacgatatcgtgtggacggtgggtcgaaccggggtt
gtgacgccgactgcggtgatggatccggttcagttggctgggacaacagtcgcacgggca
acgttgcacaatgccgacatgattcgggataaggatatccgcatcggcgacactgtcatg
ttgcataaagccggcgatattatcccggaagtttcacgcgtactggttaaaaaacggcca
gccaataccccaccagcgccgattccggaagaatgtccatcatgcggtcaaaaactggtt
caccttgatgatgaagtggcgttacgctgcatcaatccgatgtgcccggcgcaagtacaa
gaacagttgacccattttgcctcgcgtaatgcaatgaatattgatggattaggtccgaaa
atcatcgcgcaactgcaggctaagaagcttgtgacggatgtcgccgatctttatcgactt
acggccactgacttggaaaagctggataagttcaaagaaaaatcaattaataatttgtta
aatgcgattaataatagtcggcaaaattctgtcgaacgcctaatctttgggttgggcatt
cgccatgtcggtggcaaagcggcacgtattctggccgagcattttggcagtttggatgag
ctcatggcagccgaccaagaccaagttgcggcaattccgaatatcgggccaaccattgcc
gaagcggttgtcacctattttaaaacggatacggtgaagaaattggttgaacaattgcgc
tctgccggtgttaacctgcgttataccggtccaacccgtccggcagtaagcgatagtttt
gtttctggcaagaccgtggtgatcaccggcaagtttgccgagttctcccggccggaattg
acgaaacgcttagagcagctgggtgcaaaagtaactggctcagtgtcgaagaaaaccgat
ctcgtcattgccggggatgcagctggtagcaaactgaccaaagcacaggatttgaatgtt
ccaattatggatgagacagcgttgttgacgaacttgaagaattga
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