Lacticaseibacillus rhamnosus GG: LGG_01016
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Entry
LGG_01016 CDS
T00987
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrh
Lacticaseibacillus rhamnosus GG
Pathway
lrh03030
DNA replication
lrh03410
Base excision repair
lrh03420
Nucleotide excision repair
lrh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGG_01016 (ligA)
03410 Base excision repair
LGG_01016 (ligA)
03420 Nucleotide excision repair
LGG_01016 (ligA)
03430 Mismatch repair
LGG_01016 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrh03032
]
LGG_01016 (ligA)
03400 DNA repair and recombination proteins [BR:
lrh03400
]
LGG_01016 (ligA)
Enzymes [BR:
lrh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGG_01016 (ligA)
DNA replication proteins [BR:
lrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGG_01016 (ligA)
DNA repair and recombination proteins [BR:
lrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGG_01016 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGG_01016 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGG_01016 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGG_01016 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_8
HHH
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CAR86911
UniProt:
A0A7S7FPB3
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All DBs
Position
1027430..1029454
Genome browser
AA seq
674 aa
AA seq
DB search
MLSKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFP
KLVTPDSPTQQVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQANVGHAVDYNV
ELKIDGLALSLIYENGRLVQGSTRGDGNVGEDVTKNVLTIASVPKTLKRPLSLEVRGECY
MPKAAFAKLNARKEADGDTPFANPRNAAAGSLRQLNPKITAGRELDTFIYTLIDADRFNV
KTQHEAIAFMQDLGFTTNPSSEVASDMQAIDAYITKYTSDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAKTVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVKKRPANTPPAPIPEKCPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIIAQLQAKKLVTDVADLYRL
TATDLEKLDKFKEKSINNLLNAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGSLDE
LMAADQDQVAAIPNIGPTIAEAVVTYFKTDTVKKLVEQLRSAGVNLRYTGPTRPAVSDSF
VSGKTVVITGKFAEFSRPELTKRLEQLGAKVTGSVSKKTDLVIAGDAAGSKLTKAQDLNV
PIMDETALLTNLKN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttaagtaaaccagctgctcaatttacacttgaagaagccgaagccgagattgccaag
cttcgaaaacagttaaatcaatggcgcttggagtattacaccaaagacgctccaacggtc
acagataatgtttatgatgatcattatcgtgacttgcaagcgttagaagccgcttttcca
aaactggtgacgcctgattcaccgacgcagcaagttggcgatgtcattaattcggatttt
gccaaagttcagcacccgattcccatgctgtcaatgggcgatgtcttttcatttgaagaa
cttagcgaatgggatgcgcggatgcaggctaatgtggggcatgcggttgattacaatgtt
gaattgaagattgacggccttgctttgtcgcttatttatgaaaatggccgcttagtgcaa
ggctccactcgtggtgacggtaatgtcggcgaagatgtgacaaagaatgttttaaccatt
gcttcggtgcctaagaccttgaagcggccactatcgcttgaagtgcgcggtgagtgctat
atgcctaaagctgcgtttgccaaattaaacgcacgcaaggaggcagatggggacacgcca
tttgccaacccgcgtaatgctgcggccggctcgctacgacagctcaatcctaaaatcact
gccggacgggaattggacacgtttatttatacgttaattgacgccgatcggtttaatgtc
aaaacccagcatgaggcgatcgcatttatgcaggatcttgggttcacaaccaatccaagt
tccgaagtggctagcgatatgcaagcgattgatgcctatatcacgaaatacaccagcgat
cgggatgctttgccgtatggaattgatgggattgtgctaaaggtcaatgacttggctttg
caggcccaactcggaaacaccgtcaaagtaccgcggtgggaaattgcctataagtttccc
ccggaagaagccaaaacggtgattcacgatatcgtgtggacagtgggtcgaactggggtt
gtgacgccgactgcggtgatggatccggttcagttggctgggacaacagtcgcacgggca
acgttgcacaatgccgacatgattcgggataaggatatccgcatcggcgacactgtcatg
ttgcataaagccggcgatattatcccggaagtttcacgcgtcctggttaaaaaacggcca
gccaataccccaccagcgccgattccggaaaaatgcccatcatgcggccaaaaactggtt
caccttgatgatgaagtggcgttacgctgcatcaatccgatgtgcccggcgcaagtacaa
gaacagttgacccattttgcctcgcgtaatgcaatgaatattgatggattaggtccgaaa
atcattgctcaactccaggctaagaagctcgtgacggatgtcgccgatctttatcgactc
acggccactgacttggaaaagttggataagttcaaagaaaaatcaattaataatttgtta
aatgcgattaataatagtcggcaaaattctgtcgaacgcctaatctttgggttgggcatt
cgccatgtcggtggcaaagcggcacgtattctggccgagcattttggcagtttggatgag
ctcatggcagccgaccaagaccaagttgcggcaattccgaatatcgggccaaccattgct
gaagcggttgtcacctattttaaaacggatacggtgaagaaattggttgaacaattgcgc
tctgccggtgtcaacctgcgttataccggtccaacccgtccggcagtaagcgatagtttt
gtttctggcaagaccgtggtgatcaccggcaagtttgccgagttctcccgtccggaattg
acaaaacgcttagagcagttgggtgcaaaagtgactggttcagtgtcgaagaaaaccgat
ctcgtcattgccggggatgcagctggtagcaaactgaccaaagcacaggatttgaatgtt
ccaattatggatgagacagcgttgttgacgaacttgaagaattga
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