Ligilactobacillus ruminis: LRC_02590
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Entry
LRC_02590 CDS
T01626
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lrm
Ligilactobacillus ruminis
Pathway
lrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRC_02590 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrm03021
]
LRC_02590 (rpoB)
03400 DNA repair and recombination proteins [BR:
lrm03400
]
LRC_02590 (rpoB)
Enzymes [BR:
lrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRC_02590 (rpoB)
Transcription machinery [BR:
lrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRC_02590 (rpoB)
DNA repair and recombination proteins [BR:
lrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRC_02590 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEN77579
UniProt:
G2SQV5
LinkDB
All DBs
Position
284517..288101
Genome browser
AA seq
1194 aa
AA seq
DB search
MNNLAGHLVKYGKHRVRRSYSRIKEVLELPNLIEIQTDSYKWFLDEGLREMFEEIMPIED
FAGKLSLEFVNYQLLEPKYTVDEAREHDANYSAPLHVTLRLINKETGEIKSQDVFFGDFP
LMTKQGTFIINGAERVIVSQLVRSPGVYFNSEMDKNGRETYGTTVIPNRGAWLEYETDAK
NISYVRIDRTRKIPLTELVRALGYGTDSEIIEILGQNDCLMNTLEKDVHKNTEDSRIEES
LKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAAVGRYKINKKLDLKTRLLGARLAE
TLADPETGEIIVESGEVVTKPIMEKLAPYLKRDDFKMFTFHPSEEGVVQEPMTLQIIKVY
SETNPEEVINLIGNGNVPLEYKHITPSDILASMNYFFNLQEGLGSTDDIDHLGNRRIRSV
GELLQNQFRIGLTRMERVVRERMSIQDISTVTPQQLINIRPVVASIKEFFGSSQLSQFMD
QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS
TYAHVNKYGFVETPYRRVSWDTHKVTDKIDYLTADEEDNYVVAQANSPLNDDGSFVDPVV
MARSKDENIEISVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIK
PHAPLVGTGIEYKAAHDSGDALIAEHAGTIEYVDAREIRVRREDGALDSYKLMKFRRSNG
GKNYNQTPIVRVGDYVDADEVLADGPSMEQGELALGQNPLIAFMTWDGYNFEDAIAINER
LVKEDVYTSIHIEEHESEARDTKLGPEEMTREIPNVGEDALKNLDEFGIIRVGAEVKDGD
ILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTREAGDE
LAPGVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPM
GVPSRMNIGQVLDLHLGMAARKLGIHVTSPVFDGARDEDIWNALKEAGLPSDGKSILYDG
RTGEPFDNRIAVGVMYYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEQIPQPGVPESFRVLVKELQALGL
DMKVLDSKKQEIELRDMDEEDDEVVNVDALAKLSHEKEEKQEAENTEEETKSEL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaacttggcaggacatttagtaaaatatggcaagcaccgtgtgcgcagaagttat
tctcgaattaaagaagttcttgaattgccaaacttgattgagatccagacggattcatac
aagtggttcttggatgaaggacttcgcgaaatgtttgaggaaattatgccaatcgaagac
tttgccggcaaattgtcgcttgaattcgtaaactatcaattattggaacctaagtatacg
gttgatgaggctcgtgagcatgatgctaactactcagctcctttgcacgtaacattgcgt
ttgattaacaaggagaccggcgaaatcaagtctcaagacgtatttttcggtgatttccca
ctgatgacgaagcaaggcacattcattatcaacggtgcagagcgtgttatcgtttctcag
cttgttcgttctccaggcgtttactttaactctgaaatggataagaacggtcgtgaaaca
tacggcacgacggttattcctaaccgtggcgcatggcttgaatatgaaacggatgctaaa
aacatttcatacgtgcgtatcgacaggacgcgcaagattcctttgacggaattggttcgt
gcgctcgggtatggtacggactctgaaatcattgaaattctcgggcaaaacgactgcttg
atgaatactttggaaaaagacgttcacaagaatacggaagattcgcgcattgaagaatcc
ttaaaggatatctacgaacgcttgcgtccaggtgaacctaagacggctgattcttcacgc
agcttgctgacggcgcgcttctttgatccgaaacgctatgaccttgctgcagtcggtcgt
tacaagattaataagaagcttgaccttaagacgcgtcttttgggcgctcgtttggccgaa
acgctggctgatcctgaaacgggcgagattatcgtcgaaagcggcgaagtcgttacgaaa
ccgatcatggaaaagcttgctccttacttgaaacgtgacgatttcaagatgttcacgttc
catccttcagaagaaggcgttgttcaagaaccgatgacgctccaaatcatcaaggtttat
tcggaaaccaaccctgaagaagtcatcaacttgatcggaaacggcaacgttcctttggaa
tacaagcacattacgccatcagatattttggcatcaatgaactacttcttcaatttgcaa
gaaggtctcggctcaactgacgatatcgaccacttgggcaaccgtcgcatccgttccgtt
ggcgaattgcttcaaaaccaattccgaatcggtttgacgagaatggaacgcgtcgttcgc
gaacgcatgtctattcaagatatctcgacggttacgccgcaacagttgatcaatattcga
cctgtcgtagcttcaatcaaggaattcttcggaagttcccagctgtcgcagttcatggat
cagacgaatcctctcggcgaacttacgcataagcgtcgtttgtcagccctgggacctggc
ggtttgactcgtgaccgtgccggatatgaagttcgtgacgttcactatactcactatggt
cgcatgtgcccgatcgaaacgcctgaaggtcctaacatcgggttgatcaacagtttgtcg
acatatgctcacgtcaacaagtacggctttgttgaaacgccttatcgtcgcgtttcatgg
gatacgcacaaagttacggacaagattgactatctgacagccgatgaagaagataattac
gttgttgcgcaagccaactctccgcttaatgatgacggttcttttgtagatccggtcgtt
atggctcgcagcaaggatgaaaacattgaaatttcagttgacaaggttgactacatggac
gtttcgcctaagcaggtagttgctgttgcaacggcatgtattcctttcttggaaaacgat
gattccaaccgtgctttgatgggtgccaacatgcagcgtcaggcggttcctttgattaag
ccgcacgcaccgcttgtcggtaccggtatcgaatataaggctgctcatgactccggagat
gctttgattgcagaacatgccggaacgattgaatatgtagatgccagagaaatcagggtt
cgccgtgaagacggagcgcttgattcatacaagttgatgaagttccgtcgctctaacggc
ggcaaaaactataaccagacaccgattgttcgcgttggtgattacgttgatgcagatgaa
gttttggcagatggtccttcaatggaacaaggcgaacttgccttgggtcaaaatccgctg
atcgccttcatgacatgggatggctacaacttcgaagatgcgattgcaatcaatgaacgt
ttggttaaagaagacgtttatacgtcgattcacatcgaagaacatgaatcagaggcgcgt
gatacgaaactcggacctgaagaaatgactcgcgaaattcctaatgttggtgaagacgca
ttgaagaacctcgatgaattcgggattattcgtgtcggtgccgaagttaaggatggcgac
attttggtcggcaaggtaactccgaaaggtgtgacggagctttcagccgaagaacgcctc
ttacacgcaatctttggcgaaaaggcgcgtgaagtacgtgatacttctcttcgcgttcct
catggcggcggcgggatcgtccaagacgtcaaaatcttcactcgtgaagcaggcgacgaa
ttggcacctggcgtaaatatgatggttcgtgtttatattgcacaaaaacgcaagcttcaa
gtcggtgacaagatggccggccgtcacggcaacaaaggtacggtttccgtcgttatccct
gaagaagacatgccgtttatgcctgatggcactccaatcgatatcatgctttcgccaatg
ggcgttccatcacgtatgaatatcggtcaggtactcgatcttcacttggggatggctgct
cgcaagcttggcattcacgtaacgtcacctgttttcgatggtgctcgtgatgaagatatt
tggaatgccttgaaggaagcaggtcttccttctgatggaaagtcgatcttgtatgacggt
cgtaccggtgaaccgtttgacaaccgaattgccgtcggcgtcatgtactacatgaaactg
gctcacatggtcgatgacaagattcacgcacgttcgatcggaccatactcacttgttacg
caacaacctcttggcggtaaagctcaatttggtggacagcgtttcggtgaaatggaagtt
tgggcgcttgaagcgtacggtgctgcctacacgctgcaggaaatcttgacttacaagtct
gatgacgttgtcggacgcgttaagacatatgaagctatcgttaagggcgaacaaattccg
caacctggcgttcctgaatcattccgcgttcttgtaaaggaattgcaggcattgggactt
gatatgaaggttcttgattctaaaaagcaagaaatcgaattgcgcgatatggacgaagaa
gacgatgaggtcgtcaacgttgatgctttagccaagttatcgcatgaaaaagaagaaaag
caagaagcagaaaacactgaagaagaaacaaagtctgaattataa
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