Ligilactobacillus ruminis: LRC_14010
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Entry
LRC_14010 CDS
T01626
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
3.6.4.13
]
Organism
lrm
Ligilactobacillus ruminis
Brite
KEGG Orthology (KO) [BR:
lrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrm03019
]
LRC_14010
03009 Ribosome biogenesis [BR:
lrm03009
]
LRC_14010
Messenger RNA biogenesis [BR:
lrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRC_14010
Ribosome biogenesis [BR:
lrm03009
]
Prokaryotic type
rRNA helicases
LRC_14010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEN78653
UniProt:
G2SQK6
LinkDB
All DBs
Position
complement(1455186..1456526)
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AA seq
446 aa
AA seq
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MTQTFAQFGFKPFINAALKEIGFKEPTEVQARLIPMILKRRSVVGQSQTGSGKTHTFLLP
IFQTIDPELTEVQAVITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGGTDKQRQIEKL
EHRQPQIVIGTPGRVLDLMKSQALDVHNASVLVVDEADMTLDLGFLKETDAIASAMPKEL
QMMVFSATIPDKLKPFLRKYMTDPIVEVVENKNVISPTIDNWLISTKGRDRNQLIYQLLT
MGQPYLALVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQFVVA
TDLAARGIDIEGVSQVINDDIPEDLEFFIHRVGRTGRNGMEGTAITLYAPSEDKMIAELE
NLGISFEEKKLSNGELVASYDRNRRFKRRTRSNKLDPKIVGMVKKEKKKRKPGYKNKIKR
AIKRDEQQKRKLARRQEMRNARRGNR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaacatttgcgcaatttgggtttaagccgtttatcaatgcggctttgaaggaa
atcggctttaaagaaccgacagaagttcaggcacgcctgattccgatgattttaaaaagg
cgaagcgttgtcggacagtctcaaacgggaagcggcaagacgcacacttttctgttgccg
atttttcaaacgattgatccggaactgacggaagttcaagcagtcattacgactcctagc
cgtgaattggcatatcaaatttatgatgctgccaagcaaattgcaaaacacagcgaaaaa
gaaatactggttcacaactatgttggcggaacggataaacagcgccagatcgaaaaactt
gaacacaggcagccgcaaatcgtcatcggaactcctggacgcgtgcttgatttgatgaaa
tcacaagcacttgacgttcataatgcctccgttttggtggttgacgaggctgacatgacg
cttgatcttggctttttgaaggaaacggacgcaatagcttctgcgatgccaaaagagttg
cagatgatggtcttttcagcaacgattcctgataagctcaagccgtttttgagaaagtac
atgacggatccgatagttgaagtcgttgagaataaaaacgtcatcagtccgacaattgac
aattggctgatttcaaccaaggggcgcgacagaaatcagttgatctatcagcttttgacg
atgggtcagccttatttggcgctggtctttgcgaataccaaggaacgcgtggatgacttg
acgagatatttgcgttcgcaaggattgcgagttgcaaagattcatggcggaattccgcca
agagaacgcaaaagaaccatgcgcgaaattcaaaatatggaatatcaattcgtagtggca
acggatttggcggctcgcggaatcgacattgaaggagtttctcaagtcatcaatgacgat
attccggaagatcttgaattctttatccatcgcgtcggccgaacggggcgcaacggcatg
gaaggaacggcgattacgctgtatgctccaagtgaagacaagatgattgccgaattggaa
aaccttggcatttcttttgaagaaaagaaactttcaaacggagaactcgtcgcttcttat
gatcgcaatcgtcgtttcaagcgcagaacaaggagtaataagcttgatccgaaaattgtc
ggaatggttaaaaaagaaaagaagaaacgcaagcctggctataaaaacaagattaaacgc
gcaatcaagcgtgatgagcagcaaaaacgcaaacttgcgcgcagacaagaaatgcgcaat
gccagaaggggaaacaggtag
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