Limosilactobacillus reuteri SD2112: HMPREF0538_21947
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Entry
HMPREF0538_21947 CDS
T01551
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03030
DNA replication
lru03430
Mismatch repair
lru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0538_21947 (polC)
03430 Mismatch repair
HMPREF0538_21947 (polC)
03440 Homologous recombination
HMPREF0538_21947 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lru03032
]
HMPREF0538_21947 (polC)
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_21947 (polC)
Enzymes [BR:
lru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0538_21947 (polC)
DNA replication proteins [BR:
lru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0538_21947 (polC)
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0538_21947 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
RNase_T
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
AAL_decarboxy
DUF655
Zn-ribbon_8
DEDDh_C
HlyD_3
YhfH
Motif
Other DBs
NCBI-ProteinID:
AEI58154
UniProt:
F8DP18
LinkDB
All DBs
Position
1980048..1984379
Genome browser
AA seq
1443 aa
AA seq
DB search
MGLSRQELFGKLLEQIHFPEKDNSAFRNAAVQSVVVHKKSRHWEFHLIFNKTLPYDLFTQ
FNQSLQLGFKDIAKVSLKISTPMTELDESQIANYWQFIINKAISDTPMLQQACLQTAPEV
KEGRVTLVVENEVIKDLLAQKALDKIEKSYQELGFPKFRIHPFVDQSASQAKIEELKAKH
EKADAALAAKAAARIKKNEAAKKTAKKSAPVAPADGPVQLGRMIDSKQNVIQMKDIEGEE
RSVVVEGYVFNAEIRELRSGRQLLTFEITDYTSSFAVKKFSRNSDEEAQFANIKAGMWLK
VRGPVQEDTWMRDLVITAYDVNEVTHTARQDKAPQDDKRVELHTHTTMSQMDATNSITEL
ATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLYGMEANVVDDGIPLVYNENHEE
LAHQTYVIFDVETTGLSAIYDKVIELSAVKMQDGNVLERFDEFIDPGFPLSEQTTNLTSI
TTEMVQGSKTEEEVFQMFKDFCKGCIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLP
LARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLLYKFLKDAEARYDVKYVDD
LNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLVSLSNVEYFYRVPRIPRTVLTKYRE
GLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIEVQPKPNYAPLLEQHVIADEDHLED
ILKNMVKLGDELEKTVVATGDVHYLDPHDGIYRKILINSQGGANPLNRTERPEVHFRTTD
EMLNEFAFLGEEKAHELVVENSNKIAAEIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTA
RKWYGDPLPQLVQDRIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVGSRGSVGSSVV
ATLSGITEVNPLPPHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQ
TFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYVKAYE
RDTEKEFRKAEEDRLAKGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQTAAWE
TTHFDFHSIHDNILKMDILGHDDPTMIRALQDLSGIDPQSIPMDDPGVMALFSSPKVLGV
TEEQIQSKTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISGLSHGTGVWLDNAQELIKQ
GIATIANVIGCRDNIMTDLIHYGMDSEISFQIMEHVRKGRGIPDEWQEKMHEANVPQWYM
DSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAV
KQRMKEINDKGNDASAKEKNLLTILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIA
PFRAVPGLGLNVAKQIVAAREERPFLSKEDLAERGKVSQTLIDFLTDNHVLDKLPDENQL
SLF
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
gtgggattaagtcgccaagaattatttggaaaactattagaacaaattcactttccggaa
aaagacaattctgcattcagaaatgccgcagttcaatcagttgttgttcataaaaagtct
cggcactgggaatttcacttaatctttaataaaactttaccgtatgacctatttacgcag
ttcaaccagagcttacagctagggttcaaagatattgctaaagttagtttgaagattagt
actcccatgacagaacttgatgaatcacagatagctaattattggcagttcatcattaat
aaggcaattagtgatacaccaatgctccaacaagcttgcttacaaacggctcccgaggtt
aaggagggtcgtgtaacgctggttgttgaaaatgaggtaattaaagacttactagcacag
aaagcattagataagattgaaaaatcataccaagagctaggctttcctaaatttaggatt
cacccatttgttgaccagtcagcctcgcaagcaaaaattgaagaattaaaggctaaacac
gagaaagccgatgctgcgcttgctgccaaggcggctgcccggatcaagaaaaatgaggct
gcaaagaagacagcaaagaaaagtgcaccagttgctcctgctgatggcccagttcaactt
ggccggatgattgatagtaagcagaatgttattcaaatgaaagacattgagggtgaagag
cggtccgtggttgttgaaggatatgtatttaatgcagaaattcgcgaactacgctcaggt
cgtcaattattaacctttgaaattacggactacacttcttcttttgctgtcaagaaattc
tcacgcaacagtgatgaagaagcacaatttgccaatatcaaagcaggaatgtggttgaaa
gttcgcgggcctgtacaagaagatacttggatgcgagacttggtaatcacggcttatgat
gttaatgaagtaactcatacggcgcgtcaagataaagctcctcaagatgataaacgagtt
gaacttcatacgcatacaacaatgagtcagatggatgccactaattcgattactgagctt
gcaactcgtgctcataagtggggacatccagcaattgcggtaaccgatcatgggaatgtc
caggcttttccagaagcatttagcgtggcccaaaaaacgggcattaaaatgctatatgga
atggaagctaatgttgttgatgatggaattccattggtatacaacgagaatcatgaagaa
ctcgctcatcagacctatgtcatttttgacgtggaaacgacagggttatcggcaatttac
gataaggtaattgaattgtctgcagttaaaatgcaagatggaaatgtcttagaacgtttt
gatgaattcatcgatcctggtttcccgttatcagaacaaacaactaatttaactagtatc
accactgaaatggttcagggttcaaaaactgaagaagaagtttttcagatgtttaaggac
ttttgtaagggctgtatcattgctggtcataacgttgcatttgatatgggttttatgaat
actggctatgaacgtcatcaaatgggaaaaatcgcggaaccagtaatcgatacattacca
ctggcgcgattcttatatcctgatatgcgaggataccgattaaacacgcttagtaaaaag
tttaaggtagcattggaacatcaccaccgtgctaactatgattcggaagctacaggacac
ttgctttataagttcttgaaagatgctgaagcccgttatgatgtgaagtatgtggatgat
ttaaataagcacatggaagaaaataatgcttaccgtcatgcgcggccttttcatgtaacg
atttttgcgcagacccaggctggtttgaaaaacttatttaagttagtatcgctatcaaac
gttgaatatttttaccgagtaccgcgaatcccgcgaacagtgctgacgaaatatcgtgaa
ggactgcttttgggaactgcttgttcatcgggagaagtatttaccgcgatgatggagaaa
ggttacgatcaagcactagaaaaggcgcgctactatgattttattgaagttcagcccaag
ccaaactatgcaccgttacttgaacaacatgtgattgcagatgaagaccacctcgaagat
atcctcaaaaatatggtcaaactaggggatgagttggaaaaaacagtggttgccactgga
gatgtccattaccttgatccacatgatggaatttaccgtaagatcctgattaattcgcaa
ggtggcgcaaacccgttaaatcgaactgagcgtccagaagtgcactttaggaccactgat
gaaatgctaaatgaatttgcttttctcggtgaagaaaaagcccacgaattagttgtagag
aatagtaataagattgcagctgagattgatgacaatattcggccagtaaaagataaactt
tatccaccgcatatgaaaggggccgaacaggaaatccaagatcggacatggaatactgcg
cgaaaatggtatggtgatcctttgccacaactagttcaggaccggattgaattagagttg
aacagtattgttaagaacggattctctgttcactatttaattgcccaacgactagtagct
aagtccaataaagacggatacttagtaggttcgcggggatctgttggttcaagtgtggtt
gcaacgctttcgggaattacagaagttaacccgttgccaccgcattaccgttgtccaaat
tgtcaatttactcacttctatacgcaaggggaatatagttcaggtttcgatttgccagat
aaaaaatgtccaaagtgtggcactctaatggtaaaagacggtcatgatattccattccaa
actttccttgggtttaagggtaataaggtaccagatattgatttaaacttctctggtgac
taccagccaattgcccataactatatgaaagtcttattcggtgaaaaaaatgtattccgt
gccgggacaattggtacggttgctgataagacggcatatggatatgtgaaggcttacgaa
cgagatacagaaaaggaatttagaaaggcagaggaggatcgcttagcaaaaggagctact
ggtgttaagcgaactactggtcagcacccagcgggaattattattgttcctgatgatatg
gatatttatgactttacacctgtacagtatcctgctgatgatcaaacagctgcctgggaa
acaactcactttgatttccactcgattcacgataatattcttaaaatggatattttggga
catgatgatccaacgatgattcgtgccttgcaagatttatcaggaattgatcctcaatcg
attccaatggatgatccaggggtgatggccttattctctagtcctaaggtattaggggta
actgaagaacaaattcaaagtaaaactggtacactaggattgccggaattcgggacgcga
tttgtccgggggatgctggaggatactcatccgaaaaattactcgcaattattacaaatt
tctggtctttcacatgggactggtgtgtggctagataatgcccaggaactaatcaaacag
ggaattgccactatcgctaatgttattggttgtcgtgataacatcatgaccgacttaatc
cactatggaatggactcagaaatttctttccaaattatggaacacgtacggaaggggcgc
gggattccagacgagtggcaagaaaagatgcatgaagctaatgttccacaatggtatatg
gactcatgtttgaagattaagtatatgttcccgcgggcgcacgcggctgcttatgtcttg
atggctctacgaattgcttactttaaggtttatttcccgttagtttattattgtgcattc
ttctctgtgcgagcagatgactttgatgtagtagcgatgtctcatggtaaagatgcggtt
aagcaacggatgaaagaaatcaatgataagggaaatgatgccagtgcaaaagagaagaat
ctcttaacaattcttgaactagctaatgagatgctggaacggggctttaagtttaagatg
gttgatattgaaaaatcagatgcctccgattggttgattgatggtgattcattaattgca
ccattccgagcagttcctggattagggctaaacgttgctaagcaaattgttgccgcacgt
gaagaacgtccattcctttctaaagaagatttggcagagcgtggaaaggtttcgcagaca
cttattgactttttgacagataatcatgtattagataagctgcctgacgaaaatcaactt
agcttattttaa
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integrated database retrieval system
