Luteibacter rhizovicinus DSM 16549: BJI69_16535
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Entry
BJI69_16535 CDS
T04563
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrz03016
]
BJI69_16535
Enzymes [BR:
lrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BJI69_16535
Transfer RNA biogenesis [BR:
lrz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BJI69_16535
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
APG05349
UniProt:
A0A0G9HFM5
LinkDB
All DBs
Position
complement(3630240..3631358)
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AA seq
372 aa
AA seq
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MTSSDLAPAAPWIDNHDELATWLAPVGPTDVVGLDTEFMRRNTFYPQLALLQLAHDGRYA
LIDPVAFPLGDVLRPTFADNPVVTVMHSAGEDLEAMSPFLPDGPRTLFDTQIAAAFVGMG
LGISYRALVAELVGAELDKGETRSDWLQRPLTESQKLYATLDVVHLHPVHAILSERLVER
DRAAWHAEDCARMKRRASEREGDPQPQRSFKSAADWTPEKQALLRRVLRWRERSARELDK
PRSWLLEDAQALDLTSSLPRDAANLDERVRGTRALRAPQRKELFDLLQRPLEAHEIESTA
SVVGHPVGDAKRAINEMRSVIDLLATQLDLPPGLLCSRRSMEEYVMTGVWPEALEGWRRG
VLHERLAGLLPG
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgagcgacctcgctcccgccgcaccgtggatcgacaaccacgacgaactggcc
acgtggctggcccccgtcggcccgaccgacgtcgttggcctcgataccgagttcatgcgg
cgcaacaccttctatccacaactcgccctgctccagctggcccacgacggccgctatgcc
ctgatcgacccggtggcgttcccgctcggtgacgtgctccgcccgacgttcgccgataac
cccgtggttacggtgatgcacagcgccggcgaagatctcgaagccatgtcgccgttcctg
cccgacggtccgcgcaccttgttcgacacgcagatcgccgcagccttcgtcggcatgggc
ctgggcatcagctaccgtgcgctggtcgccgagctggtcggtgccgaactggacaagggc
gagacgcgtagcgactggctgcagcgcccactgaccgaatcgcagaagctctacgcgacg
ctcgatgtggtccacctgcatcccgtgcacgccattctgagtgaacgcctggtcgagcgc
gatcgcgctgcctggcacgccgaggattgcgctcgcatgaagcgccgggcgagcgagcgc
gaaggcgatccgcagccgcagcgcagcttcaagagtgccgcggattggacgccggagaag
caggccctgctacgccgtgtgctgcgctggcgcgaacgcagcgcgcgcgaactcgacaag
ccacgctcctggttgctcgaagacgcgcaggccctcgacctcaccagcagcctgccccgc
gatgccgcgaatctcgacgagcgcgtacggggtacccgtgccctgcgtgcgccgcagcgc
aaggagctgttcgatctgctccagcgtccgcttgaagcccatgaaatcgagtcgaccgcg
tcggtcgtcggtcaccccgtgggtgacgccaagcgcgccatcaacgaaatgcgtagcgtg
atcgacctgctcgccacgcagctcgacctgccgcccggtctgctctgctcgcgccggtcg
atggaggaatacgtgatgacgggcgtatggcccgaggccctcgaaggctggcgccgcggc
gttctccacgagcgcctcgccggcctgctacccggctag
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