Leifsonia shinshuensis: F1C12_06535
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Entry
F1C12_06535 CDS
T06806
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lse
Leifsonia shinshuensis
Pathway
lse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C12_06535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lse03021
]
F1C12_06535
03019 Messenger RNA biogenesis [BR:
lse03019
]
F1C12_06535
Transcription machinery [BR:
lse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F1C12_06535
Messenger RNA biogenesis [BR:
lse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F1C12_06535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
AAA_22
NACHT
SAP
ResIII
TFIIA
Motif
Other DBs
NCBI-ProteinID:
QNE34814
UniProt:
A0A7G6Y8J9
LinkDB
All DBs
Position
complement(1346643..1348874)
Genome browser
AA seq
743 aa
AA seq
DB search
MTDVELHAGGVDTSDLTSLKVAELQALAAELGLQGATRLRKGELVEAIATARAAAAGTDA
PAEPEAAEPVSIETEPTENEQQADHATAASQVLIEPLIAEPAADEPIAGDALLGRDSLTE
PVAEPRRRGSRRASSPDGTSIAPSTSVGAGAHVNTGETGVESLIPDVDALLDSALASREQ
AQRDGQGGGRRRRGRGGQNGQGQQNGAQEADEQSAEAAQGEQARGDQGGDQQAESAEQGG
EQQQSGRSRRNRNRNKGGQNGDQNQQGQNQQGQNQQGQNQQGQNQQGQQNQGQPKDLQGD
GGQRGGQQNRGPQQQEQADGDRAGRYRDRNRKRRGGAGGDDLEPEIADDDVLIPVAGILD
VLDNYAFVRTTGYLPGASDVYVSLGQVKKYSLRKGDAVVGAIRQPREGDNNSRQKYNALV
KVDSINGQTVEEAATRVEFGKLTPLYPQERLRLETEPGKVTQRIIDLVAPIGKGQRGLIV
APPKAGKTIVMQQIANAITTNNPEVHLMVVLVDERPEEVTDMQRTVKGEVIASTFDRPAE
DHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLTAPASGRILSGGVDASALYPP
KRFFGAARNIEHGGSLTILASALVETGSKMDEVIFEEFKGTGNMELRLSRQLADKRIFPA
VDVNASGTRREEMLMGQDEVKITWKLRRALAGLDQQQALEIVLGRLKETSSNVEFLMQVQ
KSMPQPTNGHGTAHSHGHENDHR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatgtcgaactccacgccgggggcgtggacaccagcgacctgacctcgctcaag
gtggcggagctgcaggctctcgccgccgagctcggcctccagggcgcgacccggctccgc
aagggcgagctggtcgaggcgatcgcgacggctcgcgccgcggccgccggaaccgacgcg
cccgccgagccggaagcggccgagccggtctccatcgagaccgagccgaccgagaacgag
cagcaggcggaccacgcgaccgcggcctcccaggtgctcatcgagccgctcatcgccgag
cctgccgcggacgagccgatcgccggcgacgccctcctgggccgcgactccctgacggag
cccgtcgccgagccgcgtcgccgcggctcgcgccgtgcctccagcccggacggcacgagc
atcgccccgtcgaccagcgtcggcgccggcgcccacgtcaacaccggcgagaccggtgtc
gagtcgctcatcccggacgtcgacgcgctgctcgactccgcgctcgcctcccgcgagcag
gcccagcgcgacggccagggcggcggacgccgtcgccgcggccgtggcggccagaacggc
cagggccagcagaacggcgcgcaggaggccgacgagcagtcggccgaggcggcgcagggc
gagcaggcccgaggcgaccagggcggcgaccagcaggccgagtccgccgagcagggcggc
gagcagcagcagtccggccgcagccgccgcaaccgcaaccgcaacaagggcggccagaac
ggcgaccagaaccagcagggccagaaccagcagggccagaaccagcagggtcagaaccag
cagggccagaaccagcagggtcagcagaaccagggccagccgaaggacctccagggcgac
ggcggccagcggggcggccagcagaaccgcggcccgcagcagcaggagcaggccgacggc
gaccgcgccggacgctaccgcgaccgcaaccgcaagcgccgtggcggcgcgggcggcgac
gacctcgagcccgagatcgccgacgacgacgtgctgatcccggtcgcgggcatcctcgac
gtgctggacaactacgcgttcgtccgcaccacgggctacctcccgggcgccagcgacgtc
tacgtctcgctcggccaggtcaagaagtacagcctccgcaagggcgacgccgtcgtcggc
gccatccgccagccgcgcgagggcgacaacaacagccgccagaagtacaacgctctggtg
aaggtcgactcgatcaacggccagaccgtcgaggaggccgcgacccgcgtcgagttcggc
aagctcaccccgctgtacccgcaggagcgcctgcggctcgagaccgagccgggcaaggtc
acccagcggatcatcgacctggtcgccccgatcggcaagggccagcgcggcctcatcgtc
gcgcccccgaaggccggcaagaccatcgtgatgcagcagatcgccaacgcgatcaccacc
aacaaccccgaggttcacctcatggtcgtcctggtggacgagcgtccagaagaggtcacc
gacatgcagcgcacggtcaagggtgaggtcatcgcctccaccttcgaccgcccggcggag
gaccacaccaccgtcgcggagctcgcgatcgagcgcgccaagcgcctggtcgagctcggc
cacgacgtggtcgtgctgctcgactcgatcacccgcctcggccgcgcgtacaacctgacg
gccccggcctccggccgcatcctgtcgggcggtgtcgacgcctccgcgctgtacccgccg
aagcgcttcttcggcgccgcgcgcaacatcgagcacggcggctcgctgaccatcctcgcc
tcggcgctggtggagaccggctccaagatggacgaggtgatcttcgaggagttcaagggc
accggaaacatggagctccgcctgtcgcgccagctggccgacaagcgcatcttcccggcc
gtcgacgtcaacgcctccggcacccgccgcgaggagatgctgatgggccaggacgaggtc
aagatcacctggaagctgcgtcgcgccctcgccggcctcgaccagcagcaggccctggag
atcgtgctcggccgcctgaaggagacctcgagcaacgtcgagttcctgatgcaggtgcag
aagtcgatgccgcagccgaccaacggccacggcaccgcgcactcgcacggccacgagaac
gaccaccgctag
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