Lysobacter soli: GOY17_11160
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Entry
GOY17_11160 CDS
T06337
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
lsol
Lysobacter soli
Pathway
lsol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOY17_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsol03019
]
GOY17_11160
03009 Ribosome biogenesis [BR:
lsol03009
]
GOY17_11160
Messenger RNA biogenesis [BR:
lsol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GOY17_11160
Ribosome biogenesis [BR:
lsol03009
]
Prokaryotic type
rRNA helicases
GOY17_11160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
UvrA_inter
P-loop_SecA
CSS-motif
adh_short
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
QGW65422
UniProt:
A0A6I6GH77
LinkDB
All DBs
Position
2469524..2471632
Genome browser
AA seq
702 aa
AA seq
DB search
MSAEPSSNDAPSLKFTDLALPEPLLKALSDVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILAQIQPGRQKPQALVLAPTRELAIQVAEAFQKYAHHLPGFHVLPIYGGQ
SYYPQLQALKRGVQVVVGTPGRVIDHLERGSLDLSELRCLVLDEADEMLRMGFIDDVEAV
LKKTPETRQVALFSATMPPPIRRIAQTYLKDPVEISIKAKTTTAANIRQRYWAVSGVHKL
DAITRILEAEPFDAMIVFARTKQATEELADKLAARGIAAAAINGDVQQAQREKTIQNLKD
GKIDVLVATDVAARGLDVERISHVLNFDIPYDTESYVHRIGRTGRAGRKGEAILFVTPRE
RGMLRAIERATRQPIEPMALPTIETVNEQRVNRFLGRITGALDSDDLAQFRDLVERYERE
QNVPAVEIAAALAKLLQGDMPLLLDVTAEKLRPHAQVGFEQRSPREQGRDSRGRDRDSRF
ERDSGPRAPRESRHESRHERGDRSERPQRTETPYAPTERYERPAIERPQFESRSERPQNE
RSSFNAAESMFDDEAPTPRHEHREPREHREPREARAPEVGMETFRIEVGHQHGVKPGNIV
GAIANEAELESRYIGRIDIRDDHSLIDLPEGMPREVMDHLKRVRVAGQQLRISRPGEGGH
GGQRPHGRHERGGFDDDRRPPRGPRPQGAGPRKPGGFRPKPR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgagcccagctcgaatgatgccccgtccctgaagttcaccgatcttgccctg
cccgagcccctgctcaaggcactttcggacgtcggctacgaatccccctcgcccatccag
gccgccaccatcccgccgctgctggagggccgcgacgtgctcggccaggcgcagaccggc
accggcaagaccgccgcgttcgcgcttccgatcctggcgcagatccagcccggccggcag
aagccgcaggcgctggtactggcgccgacgcgcgaactggccatccaggtcgccgaggcg
ttccagaagtacgcccatcacctgcccggcttccacgtgctgccgatctacggcggccag
agctattacccgcagctgcaggcgctcaagcgcggcgtgcaggtagtggtcggtacgccc
ggccgcgtgatcgaccacctggaacgcggctcgctggacctgtccgaactgcgctgcctg
gtgctggacgaagccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaggccgtg
ctgaagaagacgccggagacgcgccaggtcgcgctgttctccgcgacgatgccgccgccg
atccgccgcatcgcgcagacctacctgaaggacccggtcgagatctcgatcaaggccaag
accaccaccgccgccaacatccgccagcgctactgggcggtgagtggcgtgcacaagctg
gacgcgatcacccgcatcctggaagccgaaccgttcgacgcgatgatcgtcttcgcgcgc
accaagcaggccaccgaagagctggccgacaagctcgcggcgcgcggcatcgccgccgcc
gcgatcaacggcgacgtgcagcaggcgcagcgcgagaagaccatccagaacctcaaggac
ggcaagatcgacgtgctcgtcgccaccgacgtggcggcgcgcggcctggacgtggaacgc
atcagccacgtactgaacttcgacattccgtacgacaccgaaagctacgtgcaccgcatc
ggccgcaccggtcgcgcgggccgcaagggcgaggcgatcctgttcgtgacgccgcgcgag
cgcggcatgctgcgtgcgatcgagcgcgccacgcgccagccgatcgagccgatggcgctg
ccgaccatcgaaacggtgaacgagcagcgcgtgaaccgcttcctcggccgcatcaccggc
gcgctggacagcgacgacctggcgcaattccgcgacctggtcgaacgctacgagcgcgag
cagaacgtgccggcggtggagatcgccgcggcgctggcgaagctgctgcagggcgacatg
ccgctgctgctggacgtcaccgccgagaagctgcgcccgcacgcgcaggtcggcttcgag
cagcgcagtccgcgcgaacagggccgcgattcgcgcggtcgcgaccgcgattcccgtttc
gaacgcgacagcggaccgcgtgcaccgcgtgagtcgcgccacgaatcgcgtcacgagcgc
ggcgatcgttccgaacgcccgcagcgcaccgaaacgccgtacgcgccgaccgaacgctac
gagcgtccggcgatagagcgtccgcagttcgaatcgcgaagcgaacgcccgcagaacgag
cgctcgtcgttcaacgcggccgaatcgatgttcgacgacgaagcaccgacgccgcgccac
gagcaccgcgagccgcgcgaacaccgcgagccgcgcgaggcgcgcgcaccggaagtcggc
atggaaaccttccgcatcgaggtcggccaccagcacggggtgaagccgggcaacatcgtc
ggcgcgatcgccaacgaggccgagctcgaaagccgttacatcggccgcatcgacatccgc
gacgaccacagcctgatcgacctgcccgaaggcatgccgcgcgaggtcatggaccacctt
aagcgcgtgcgcgtcgccggccagcagttgcgcatcagccgaccgggcgaaggcggccac
ggcggccagcgcccgcacggtcgccacgagcgcggcggtttcgacgacgaccgccgtccg
ccgcgcggcccgcgtccgcagggcgccggcccgcgcaagccgggcgggttccggcctaag
ccgcgctga
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