KEGG   Lonchura striata domestica (Bengalese finch): 110471003
Entry
110471003         CDS       T05897                                 
Name
(RefSeq) cyclin-dependent kinase 7 isoform X1
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
lsr  Lonchura striata domestica (Bengalese finch)
Pathway
lsr03022  Basal transcription factors
lsr03420  Nucleotide excision repair
lsr04110  Cell cycle
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110471003
  09124 Replication and repair
   03420 Nucleotide excision repair
    110471003
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    110471003
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:lsr01001]
    110471003
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsr03021]
    110471003
   03019 Messenger RNA biogenesis [BR:lsr03019]
    110471003
   03400 DNA repair and recombination proteins [BR:lsr03400]
    110471003
Enzymes [BR:lsr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     110471003
    2.7.11.23  [RNA-polymerase]-subunit kinase
     110471003
Protein kinases [BR:lsr01001]
 Serine/threonine kinases: CMGC group
  CDK family
   110471003
Transcription machinery [BR:lsr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110471003
Messenger RNA biogenesis [BR:lsr03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     110471003
DNA repair and recombination proteins [BR:lsr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110471003
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr Seadorna_VP7 Kinase-like ABC1 APH FTA2 Pkinase_fungal
Other DBs
NCBI-GeneID: 110471003
NCBI-ProteinID: XP_021386803
LinkDB
Position
Z:complement(62166614..62185764)
AA seq 275 aa
MYFVLQLIDAFGHKSNISLVFDFMETDLEVIIKDTSIVLTQSHIKAYMLMTLQGLEYLHQ
HWILHRDLKPNNLLLDGNGVLKLADFGLAKSFGSPNRVYTHQVVTRWYRAPELLFGARMY
GVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPGMTSLPDYVTFK
TFPGMPLQHIFSAAGDDLLGLLQGLFTFNPSTRVTATQALKQKYFSNRPGPTPGDQLPRP
NCPAEAAKEPQNALLNLKRKNTEGIGQGLPKKLIF
NT seq 828 nt   +upstreamnt  +downstreamnt
atgtattttgttttgcagcttattgatgcatttggacacaagtcaaatattagtctggtg
tttgattttatggaaacagatttagaggttattataaaggatacaagtattgtgttgacg
cagtctcacatcaaggcatatatgctgatgacacttcaaggattagaatatttacatcag
cattggattctacacagggatcttaaaccaaataacttgttgctagatggaaatggagtt
ttaaaattggctgactttggcttggcaaaatcttttggaagcccaaacagagtttataca
caccaggtagtaacaaggtggtaccgagccccagaactactgtttggggctagaatgtat
ggtgttggtgttgatatgtgggctgttggttgtattttagccgaattgctcctcagagtt
ccttttttgcctggagactctgatcttgaccagctgacaaggatttttgaaacactgggc
actccaacagaagaacaatggcctgggatgacaagtcttccagattatgtcacatttaag
acattccctggaatgccacttcaacatatcttcagtgcagctggtgatgatctgctcggt
cttcttcaaggcttattcacgtttaatccttccactagagtaacagctactcaggcattg
aaacagaagtatttcagtaaccgaccaggacccactccaggagatcagctgccaagaccc
aactgtcctgctgaagctgcaaaggagccacaaaatgcacttttaaatttaaaaagaaaa
aacacagaaggaataggtcaaggattgccaaaaaaactgattttttga

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