Lonchura striata domestica (Bengalese finch): 110475791
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Entry
110475791 CDS
T05897
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110475791 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110475791 (MSH6)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110475791 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
110475791
NCBI-ProteinID:
XP_031360084
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All DBs
Position
3:20708586..20723158
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AA seq
1438 aa
AA seq
DB search
MSSWPINSAFFVATISCTSFSPGFGRKQAKISHPERPSHGSFQMSRLRSPRGQXGTQGPG
RPSALPAKPGGGAGRGAARGFGARGGALPAAAMSRQSTLLRFFPRAAPPPAAGGEPRGEP
RRRSLGERNGLQAAGSPPGGAGRAAARRGEHGEKGAGGGAAAKAPSVSCEYSPGDLVWAK
MEGYPWWPCLIYNHPTERTILRGKGKATRVHVQFFDDSPTRGWISVKYLKPYKGSSDRET
MKGGMFYSTKPEIKRAMVLADDAMKKDKIKRLELAVCNEPSDTEEEEEEIEEMSENASGS
SEDCNSEEDVKSNKRVMSRERAVKTKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDAETEAESPIKVPAKRKRREVKKPAKRSSLGNECSETPKRAATVSSEAKSKLT
SFAAPESFESQANASSGGTGGFSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTLYVPE
DYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSG
FPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSKGQSTKFDKVVRREICRIITKG
TKTYSVMDCDPSENHSKFLLCVKEKEDSAGTRVYGVCFVDTSMGKFHVGQFPDDRHCSRF
RTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLLEEGY
FKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKRCLIDQELLS
QANFEEYVPVDIATAKTMSSGSLFARTGQRMVLDGVTLMNLEVLQNGTNGSTEGTLLERI
DSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLEVPDKMSEVSEYLKKLPDLERLL
SKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSTLEGFKIMNEIVEFMEEFASDF
KSRVLKQLVTRKAQNPDGRFPDLTAELTRWDTAFDHNQARKTGVITPKLGFDPDYDGALE
DIRALEEDLRRYLDKQRKLLGSKSVQYWGTGKNRYQMEIPESVISRNLPEEYELRSSRKG
YKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFAKNSKDWQTAVECIAVLDVLMS
LAHYSQGGDGPLCRPEILLPRDNARPFLELRNSRHPCITKTFFGDDFIPNDIVIGIKDEG
SSSEGSCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLGASDR
IMAGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIASAVVQELAERIQCR
TLFSTHYHSLVEDYSHSGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNA
ARLADIPEEVIQKGHRKAKEFEKTTISLRIFRYLCQVVDGTTCDANAVRKLMAMIDRL
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgtggcccataaattctgcattcttcgtggccactatcagctgcacatcgttc
tccccaggctttggcaggaagcaggcgaagatcagccatcccgaacgtccttcgcacgga
agtttccagatgtcccggctccgcagcccccgggggcagnncgggactcaggggccgggc
cgcccctcagcgcttcccgccaaacccgggggcggggcggggcggggcgcggcgcgcggg
tttggcgcgcggggcggcgcgcttcccgccgcggccatgtctcggcagagcaccctgctc
cgcttcttccccagggccgccccgccgccggcagccggcggcgagccccgcggcgagccc
cgccgccgctccttgggggagcggaacgggctgcaggccgccggcagccccccgggcggg
gcgggccgagcggcggcgcggcgcggcgagcacggcgagaagggcgcggggggcggcgcg
gccgccaaggcccccagtgtctcctgtgagtattctcctggggacttggtgtgggccaag
atggaaggttatccctggtggccatgtctcatatacaaccaccccactgaaagaacaatt
ctcagaggaaaaggaaaagccactcgtgtccacgtgcagttctttgatgacagccctaca
aggggttggatcagtgttaaatacctgaagccatataaaggttcatcagacagggagaca
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtactggca
gatgatgccatgaagaaagataaaatcaagaggcttgaactggcagtatgcaatgagcct
tcagacacagaggaggaagaggaagaaatagaggagatgagtgaaaatgcatcaggcagt
agtgaagactgcaatagtgaggaggacgtgaaaagcaataagcgagtaatgagcagggag
agagctgtaaaaaccaagagaaggagagtgttggattctgacagtgaccacgatggctct
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagtagtggg
gtggatgaaaacgagtcttctgacgcagagacagaggcagagagccccataaaagtccct
gctaaacgaaagagaagagaggtgaaaaagcctgctaaaaggagtagcctgggaaatgaa
tgttcggaaacacccaaaagagcagcaacagtctcttcagaagccaaatctaagctgaca
tcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttccagtggaggcactggt
ggcttctcagtgtgggaacacgagaagcttgactggctgcaagaagggaagaggagagat
gcgcacaggaggcgtcagggtgaccccgattacgacccctgcactctgtacgtgcccgag
gattacctcaacaagtgcacgccgggcgtgcgcaggtggtggcagctcaagagccaaaac
tttgatgctgtgatttgctacaaggtcggaaagttctatgaattgtatcacatggacgca
gtcactggcgtcaatgagctgggcctgatctttatgaagggcacctgggcccactcaggt
tttccagaaactgcgtttggccgattctctgacgtcctggtgcagaagggctacaaggtg
gcgcgcgtggagcagacggaaacgcctgaaatgatggaagcacgctgcaagtccaagggc
cagtccaccaagtttgacaaggtggtgcgccgggagatttgcaggatcatcaccaaggga
accaagacctacagcgtcatggactgcgacccctccgagaaccacagcaagttcctgctg
tgtgtgaaggagaaggaggactcagccgggacgcgcgtctacggggtctgcttcgtcgac
acctccatggggaagttccatgttggccagttcccagacgaccgccactgctccaggttt
aggactttggtagctcactacacccctgtgcaggtgctgtttgagaagggcaacctgtct
gtggacacacagaagatactgaaaggctcacttgtttcttgcattcaggaagggctgacc
tcgggttcccagttctggaatgcatctaaaacactaaaagtccttctcgaggaaggatat
ttcaaggagaagcagaattctgaaaatggatgttctctgccctctgtaatcaaatctctg
acttcagagagtgactccctgggattaactcctggtgaaaacagtgaattagctttgtca
gctcttgggggatgtgtcttctatctcaaaagatgtctgattgatcaggagctgttatca
caggcaaacttcgaggaatatgtccctgtggatattgctactgcaaaaaccatgagttca
ggtagtttgtttgccagaactggccagcggatggtgctggatggagtcaccctgatgaac
ttggaagtcctgcagaatggaaccaatggaagcacagaaggtactttgttggagaggatt
gattcttgctgtacaccatttgggaagcgactcctgaaacagtggctctgcgctccactt
tgtaaccctaaatccatcaatgatcgtttggatgctgttgaagacctcctggaagtgcca
gataaaatgtctgaagtcagtgagtacctcaagaaactacctgaccttgaaagactgctc
agcaaaattcacagcattggatcaccactcaaaagtcagaaccatcctgacagcagggcc
atcttctatgaagaaatcaaatacagcaaaaaaaaaattgctgactttctgtctaccctg
gagggattcaaaataatgaatgaaattgtcgaattcatggaggagtttgccagtgacttc
aaatccagagtgctgaagcagctggtcactcgcaaagcccaaaatcccgatggccgcttc
ccagacttgactgcagagctcacaaggtgggacactgcctttgatcacaaccaggctcgg
aagacaggggtgatcacccccaagctaggttttgaccccgattatgatggagcactagag
gatatcagagctctcgaggaggatcttcggaggtacctggataagcaacgcaagctgctc
gggtccaaatccgtgcagtactgggggacaggcaagaacaggtaccagatggaaatccca
gaaagtgtcatatcccgcaacctgcccgaggaatacgagctgaggtccagcaggaagggc
tacaagcgctactggaccaaggagatagagaagatgctggctgcgatggtgaacgccgag
gagcgccgtgacgccgccctcaaggactgcatgaggcgcctcttctacaactttgccaag
aacagcaaggactggcagacagctgtggagtgcattgctgtgctggatgtcttgatgtcc
cttgctcactacagtcaaggtggtgatggacctctgtgccgacctgaaatcctgctgcct
agggataatgctcgtcccttcctggaacttagaaattcccgccatccatgcatcacaaaa
actttctttggggatgattttattcccaatgatatcgtgataggcatcaaggatgaaggc
agcagcagtgagggctcctgtgtgctggtaactggcccaaacatgggtggcaaatctact
ctcatgagacaggctggtctcctggtggtcatggcccagctgggctgctacgtgcccgcg
gaagcctgcaggctcacacccatcgaccgcgtgttcacgcggctcggcgcctccgacagg
atcatggctggtgaaagtaccttctttgttgaattgagtgagacttccagcattctgcag
catgcaacagagcattcccttgttctcatggatgaactgggcagaggcacggccacgttt
gacggcacagccatagcgagcgccgtggtgcaggagctggccgagaggatccagtgccgg
acgctgttctccactcactaccactccctggtggaggactattcccacagtggggccgtg
cgcctgggccacatggcatgtatggttgaaaatgagagtgaggatccaagccaggaaaca
attacgttcctgtacaagttcattgaaggagcctgcccaaagagctatggcttcaatgcg
gcaagacttgcagatattccagaggaagtcattcagaaggggcacagaaaagccaaagag
tttgaaaaaacaaccatctcactgagaatatttaggtacctgtgccaggtggtggatgga
acaacatgtgatgcaaatgcagttcggaaactcatggcgatgattgaccggctttag
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