Lonchura striata domestica (Bengalese finch): 110477518
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Entry
110477518 CDS
T05897
Symbol
USP13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsr01002
]
110477518 (USP13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110477518 (USP13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110477518 (USP13)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110477518 (USP13)
Peptidases and inhibitors [BR:
lsr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110477518 (USP13)
Ubiquitin system [BR:
lsr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110477518 (USP13)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110477518 (USP13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
zf-UBP_var
UBA
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
110477518
NCBI-ProteinID:
XP_031361539
LinkDB
All DBs
Position
9:7077088..7144145
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AA seq
1163 aa
AA seq
DB search
MQRAALFRGGDAQMAAGDLGELLVPYMPTIRVPKSGDRVYKTECAFSYDSPDSEGGLYVC
MNTFLGFGREHMERHYRKTGQCVYLHLKRHVRQKVPGASGGALPKRRNAKLFLDLEISSD
LNSDDFEYEDEAKLVLFPDHYEISLPNIEELPALVTIACDALLSAKSPYRKQEPDSWEEE
LQASKHAKTLVQLDNGVRIPPSGWKCCRCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHA
TEHYRETGYPLAVKLGTITPDGADVYSFDEEEPVLDPHIAKHLAHFGIDMLQMQVTENGL
RDNDIKPRVSEWEVIQEAGVKLKPMYGPGYTGMKNLGNSCYLNAVMQAIFSIPEFQRAYV
GNLPRIFDYSPLDPTQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKFPDLEIS
SDLNSDDFEYEDEAKLVLFPDHYEISLPNIEELPALVTIACDALLSAKSPYRKQEPDSWE
EELQASKHAKTLVQLDNGVRIPPSGWKCCRCDLRENLWLNLTDGSVLCGKWFFDGSGGNG
HATEHYRETGYPLAVKLGTITPDGADVYSFDEEEPVLDPHIAKHLAHFGIDMLQMQVTEN
GLRDNDIKPRVSEWEVIQEAGVKLKPMYGPGYTGMKNLGNSCYLNAVMQAIFSIPEFQRA
YVGNLPRIFDYSPLDPTQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKPQHNG
ISPRMFKAFISKGHPEFSSNRQQDAQEFFLHLINLVERNPVGSENPSDVFRFLVEERTQC
CQSRKVRYTERVDYIMQLPVAMEAATNKDELIAYELKRREAEAARRPLPELVRAKIPFSA
CLQAFSEPSNVEDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWIPKKLDVSI
DMPDFLDISHLRARGLQPGEEELPDIAPPIVIPDDPKDHMANHFVESLDIDESSVMQLAE
MGFPLEACRKAVYYTGNLGAEVAFNWIIAHMEEPDFAEPLVIPAFGEVASSGAAALGAVG
LDNQPPEEMVAIINSMGFQRDLAIQALKATNNNLERALEWIFSHPDPEEESDPALDTMDM
ENNANANILSETGSEGPRIKDGPGRYELFGFISHMGTSTMSGHYVCHLRKEGRWVIYNDL
RVCASERPPKDLGYIYFYHRIPS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgggccgcgctcttccgcggcggcgatgcgcagatggccgccggggacctgggc
gagctgctcgtcccctacatgcccacgatccgtgtgcccaagtcaggggaccgggtctac
aagacggaatgtgccttctcctacgactcgcccgactccgaaggaggtctctacgtgtgc
atgaacacgttcctggggtttggaagggagcacatggagcggcattacaggaagacagga
cagtgtgtctacctgcacctgaagcgacacgtgagacagaaggtaccaggagcatctggt
ggagctttaccaaaaaggaggaatgctaagctatttttagatctggagataagcagtgac
ctcaacagcgatgactttgaatatgaggatgaagcaaaacttgttctctttcctgatcac
tatgaaatctcactacccaacatagaagagctaccagcactggtgacgatagcttgtgat
gcactgctcagtgcaaaatcaccctacaggaagcaggaacctgactcctgggaagaagag
ctgcaggcatctaaacatgctaaaacacttgtacagttagacaatggtgttagaattccc
cccagtggttggaagtgctgcaggtgtgacctgcgggagaacctgtggctgaacctgacg
gatggctccgtgctctgcgggaaatggttcttcgacggcagcgggggcaacgggcacgcc
acggagcactacagggagacaggctatcccctggctgtgaagctgggaaccatcactcct
gatggagcagatgtctattcctttgatgaagaggagccggttttagatccacatatagca
aaacatttggcacactttggaattgatatgctgcagatgcaagtgacagagaatgggcta
agagataatgacataaagccaagagtttcagaatgggaagtgattcaggaagctggtgtg
aaactcaagcccatgtatggcccaggatacacaggcatgaagaacctggggaatagctgc
tacctcaatgctgtcatgcaagccattttcagcatcccagagttccagcgagcgtatgtg
ggaaaccttccacgaatatttgactactcccctcttgatccaacacaagatttcaatact
cagatggctaaactgggacatggcctcctttcaggccaatactctaagccacccatgaaa
tctgagctcattgagcaggtgatgaaagaagaacacaagtttccagatctggagataagc
agtgacctcaacagcgatgactttgaatatgaggatgaagcaaaacttgttctctttcct
gatcactatgaaatctcactacccaacatagaagagctaccagcactggtgacgatagct
tgtgatgcactgctcagtgcaaaatcaccctacaggaagcaggaacctgactcctgggaa
gaagagctgcaggcatctaaacatgctaaaacacttgtacagttagacaatggtgttaga
attccccccagtggttggaagtgctgcaggtgtgacctgcgggagaacctgtggctgaac
ctgacggatggctccgtgctctgcgggaaatggttcttcgacggcagcgggggcaacggg
cacgccacggagcactacagggagacaggctatcccctggctgtgaagctgggaaccatc
actcctgatggagcagatgtctattcctttgatgaagaggagccggttttagatccacat
atagcaaaacatttggcacactttggaattgatatgctgcagatgcaagtgacagagaat
gggctaagagataatgacataaagccaagagtttcagaatgggaagtgattcaggaagct
ggtgtgaaactcaagcccatgtatggcccaggatacacaggcatgaagaacctggggaat
agctgctacctcaatgctgtcatgcaagccattttcagcatcccagagttccagcgagcg
tatgtgggaaaccttccacgaatatttgactactcccctcttgatccaacacaagatttc
aatactcagatggctaaactgggacatggcctcctttcaggccaatactctaagccaccc
atgaaatctgagctcattgagcaggtgatgaaagaagaacacaagcctcaacacaatgga
atatctcctcgaatgttcaaggcttttataagtaaaggccacccagaattctcctccaat
agacaacaagatgcacaggaatttttcctgcatcttataaatctagtagagaggaacccc
gtgggctcagagaaccccagcgatgttttccggttcctggtggaggagcgcacgcagtgc
tgccagtccaggaaggtgcgctacaccgagagggtggactacatcatgcagctccctgtg
gccatggaggcagctacaaacaaagatgaattaattgcctatgaattgaagaggcgagaa
gcagaagctgcaaggagacctctgccagagctggtccgtgccaagatcccatttagtgct
tgtctgcaggccttttctgaaccaagcaacgtagaggatttctggagcagtgcccttcaa
gcaaaatctgcaggagttaagacttcccgttttgcttcctttcctgagtacttagtggtg
cagataaagaaattcacctttggccttgactggatacccaaaaagcttgatgtttctatt
gacatgccagatttcctggatatcagtcaccttcgggccagggggctccagccaggagaa
gaggaactcccagacattgctcctcccattgtcattcctgatgacccaaaagatcacatg
gcgaaccatttcgtggagtccctagatattgatgagtcctcagttatgcagctggcagag
atgggctttcctttggaagcgtgtcggaaagctgtatactatacaggcaacctgggggct
gaagttgctttcaactggatcattgcacacatggaagaaccagactttgctgagccattg
gtcatacctgcatttggagaagtggcttccagtggggcagctgctttaggagctgtaggg
ttagataaccagcctcctgaagagatggttgcaattatcaattccatgggattccaaagg
gatctggctattcaggcactgaaggcaacaaacaataacttggagcgtgcactggagtgg
atcttcagccaccctgaccctgaggaagaaagtgaccctgccttggacacgatggatatg
gagaacaatgctaatgccaatatcctttcagagacagggtcagagggacccaggatcaaa
gatggccctggaaggtatgagctgtttgggttcatcagccacatgggaacatccacaatg
agcggccactacgtttgtcacctcagaaaggaaggaagatgggtgatctacaacgacctt
agagtctgtgcctcagaacgacctcccaaagacctgggctacatttatttttaccacagg
ataccaagttag
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integrated database retrieval system
