Legionella spiritensis: NCTC12082_00104
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Entry
NCTC12082_00104 CDS
T06800
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lss
Legionella spiritensis
Pathway
lss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12082_00104 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lss03400
]
NCTC12082_00104 (mfd)
Enzymes [BR:
lss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12082_00104 (mfd)
DNA repair and recombination proteins [BR:
lss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12082_00104 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
VEG89695
LinkDB
All DBs
Position
1:complement(118525..121995)
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AA seq
1156 aa
AA seq
DB search
MSLILNLPSSPSKQTWGQLYGSGLPLAVAEFCQNNPGIHLIVTPDNLTAGQLLAEMQFFY
GEKSSQPQLLLFPDWETLPYDQFSPHQDIISERLRTLSRVQQTSHAVVISSVNTVMHRLC
PPQFLQQHALVLQEGQSLDLQHFRQQLQQAGYHCVNKVLEHGEFAVRGSIIDVYPMGSTQ
PFRIELFDDIVDSLRLFDTETQRTIKKITDIEILPAHEFPLNEESITRFRRTFREMFSGN
PGLCPVYEAVTNGQAPSGIEYYLPLFFQETATIFDYLPTQAHVLLIEDIPERGEQFWQEL
IHRYEQRHYDVTRPILSPQTCFITPTELLTHTNQFQKIRCFHKPVDKKGALMNFKIDKAP
SLPIERQHQQPLHNLVGYLNQPERRYLLVVESPGRREVLLDLLKQSGIHPKIQPSWQAFL
NDIDSVFNITTGPLIYGCELIEQQLAIIVEAQLFGEQAVPQRRSSQKTIDPNLIIRDLAE
LRIDAPVVHLQFGVGRYQGLKTLESNGTVNEFLVLKYAGDDKIYVPVTSLHYITRYTGMD
SEHAPLHKLGTDQWQREKSKAVEKIHDVAVELLEIYARREAKPGYEYQFHTQDYQRFASG
FPFTETVDQQGAIEQIISDMQSSRPMDRLICGDVGFGKTEVAMRAAFIAVQNGKQICVLV
PTTLLAGQHFDTFRDRFAEFPVNIELLSRFRSAKESDKVLQSLQNGQTDIVIGTHKLFSR
QIQFKNLGLLIIDEEHRFGVKQKEHIKALRTHIDILSMTATPIPRTLNMAMAGIRDISLI
ATPPAKRLAIKTFWQEKNDTMLREAILREILRGGQVFYLHNNVQTIERVCLDLQALVPEA
KISSAHGQMRERELEKIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPNEKSLTADAKKRLEAIVSLEDLGAGFTLATHDLEIRGAG
ELLGEEQSGNMQAIGFNLYMDLLDKAVRDLKAGKTPELAMPSQQGPEIDLRISAIIPDDY
VSDIHTRLILYKRIANAQSREQLRELQIEMIDRFGLLPQPVKHLLLVTELKLLAARLGIN
RINAAQQQGKIEFGEQPKINAGSLIKLIQLQAARYKLDGPSKLRFTLDSINTEEKIHEIK
TLLMKLADGDLQITEH
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcattctgaatctaccttcctcgccatccaaacaaacgtgggggcagctatat
ggctccgggttgcctttggctgtggccgaattctgtcaaaataacccgggcattcacctc
attgtcaccccggacaacctgacagccggtcagcttctcgcagagatgcaattcttttac
ggcgaaaaatcctcacagccacaattactgctttttccggattgggaaacgcttccctat
gatcagttctcgccccatcaggacattatttcggagcgcctgcgtaccctgagccgagta
cagcaaacaagccatgccgtcgttatcagttcggtgaataccgtcatgcatcgcctgtgc
ccgccgcaatttttacaacagcacgccctggttttacaggaaggtcaatcgctggatttg
caacacttccgccagcaactgcagcaagccggctatcattgtgtcaataaagttctggaa
catggcgaatttgccgtccgcggctccatcattgatgtctatcctatgggcagcacacaa
ccgtttcgtatcgaattgtttgacgacatcgtcgatagcctgcgtctttttgatacggaa
acgcaacgcaccattaaaaaaattacggacattgaaatattacccgctcacgaattcccc
ctgaatgaggaaagtattacccggtttcgccgcacgttcagggaaatgttttcaggaaac
ccggggttgtgtcctgtttacgaagcggtcacgaatggtcaggccccgtcaggaattgaa
tactacttacccctgtttttccaggaaacagccactatttttgattatctcccgacccag
gcgcatgttttactcattgaggatattcctgaacggggagagcaattctggcaggaactg
atccatcgttacgaacaacgccactacgacgtcacccgtccgattttatcgcctcagacc
tgttttatcaccccgactgaattactgacccacaccaatcaatttcagaaaatccgctgt
ttccacaaacctgtggataaaaaaggcgccctgatgaattttaaaattgataaagcgccg
tcattgccgattgagcggcagcatcaacagccgctgcataacctggtaggctatcttaat
caaccggaaagaagatatctgctggttgtggaaagcccgggacggcgggaagtcttgctc
gatttgctgaaacaaagtggaatacatccgaaaatccaaccgtcctggcaagcgtttctt
aacgacatcgacagtgtgttcaacatcacgaccgggccgttaatctatggttgcgaattg
attgaacaacaattggctatcatcgttgaggcgcaattatttggcgaacaagccgtcccc
caacgccgcagcagccagaaaaccatcgacccgaacctgattatccgggatcttgcggaa
cttcgcatcgatgccccggttgttcatctgcagtttggggtaggacgctatcaaggcctg
aaaaccctggaaagcaatggaaccgttaacgagtttctggtattgaaatacgccggtgac
gataaaatttatgtccctgtgacttccttgcattatattacccgatacaccggaatggat
agtgaacacgcccctttgcacaagctcgggacggatcagtggcagagagaaaaaagcaag
gccgtcgagaaaatccatgacgtggccgtcgaattgctggaaatttatgccaggcgtgaa
gcaaagccaggttatgaataccagtttcacacacaggattaccaacgctttgccagcggg
tttcccttcacggaaacagtcgaccagcaaggagccatcgaacaaatcatcagtgacatg
cagtcttcccgtcccatggatcgactgatctgcggtgatgtgggctttggcaaaaccgag
gtcgccatgcgagccgcctttattgccgtacaaaacggtaaacagatatgtgttctggtt
cccacaacattgctggcaggccagcattttgatacatttcgtgatcgtttcgcggaattt
cccgttaatattgagttgttatcacgctttcgcagcgcgaaagaatcagacaaggtattg
cagtccctgcaaaatgggcagaccgatatcgttattggcacgcataaactgttttccaga
cagatccagtttaaaaatctgggtttactgattattgacgaagaacaccgttttggcgtc
aaacaaaaagagcatattaaagcattaagaactcatattgatattctatccatgaccgcc
acccctattccgcgtaccttgaacatggccatggcggggatccgtgacatttcgttaatt
gcaacgcctcccgccaaacgtctggccattaaaacattctggcaggagaaaaacgatacc
atgctcagagaggccatactccgggaaattttgcgcggcggccaggtcttttatctgcat
aataacgttcagaccattgaacgggtttgcctcgatttacaagccctggttcccgaagca
aaaatcagcagtgcgcacggtcagatgcgcgagcgggagcttgaaaaaatcatgtcggat
ttttatcaccatcgctttaatgtgctggtctgcacgaccatcattgaaacgggtattgat
attccaacagccaacaccatcattattgaccgcgccgacaaattcggtctggcacagctg
caccagctcagaggccgggttggtcgctcccatcatcaagcctacgcctatctgctgacg
cccaatgaaaaatccctgacggctgacgccaaaaaacgtctggaagccattgtttcgctg
gaagacctcggcgccggattcaccctggctactcatgatctggaaattcgcggagccggt
gaactgctcggggaggaacaaagcggaaacatgcaggccataggttttaatctgtatatg
gatctgctggataaagccgtcagggatctgaaagcagggaaaacgcccgagctggccatg
ccctcgcagcaaggtcccgagatagacttgcggatcagcgccattatcccggatgactat
gtatcggatattcatacccgattgatcctgtacaaacgtatcgccaatgcccaaagcagg
gaacaattgcgtgaactccagatagaaatgattgatcggttcggcctgcttccgcaaccg
gtcaagcacttgctgctggtaaccgagttaaaattgctggctgccaggttgggcatcaac
aggattaacgccgcacaacagcaaggtaaaattgaattcggggaacaaccaaaaattaat
gccggttcgctgattaagctcatccagctgcaagcggcacgctacaaactggatggcccc
tcaaaactgcgatttacactcgacagtatcaataccgaagaaaaaatccacgaaatcaaa
acccttttaatgaagctcgccgatggtgatttgcaaataacggaacactag
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