Lactuca sativa (garden lettuce): 111883181
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Entry
111883181 CDS
T05352
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Module
lsv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111883181
Enzymes [BR:
lsv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
111883181
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GFIT
Motif
Pfam:
Glyco_hydro_28
RVT_2
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
111883181
NCBI-ProteinID:
XP_052620826
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Position
6:29776158..29780770
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AA seq
548 aa
AA seq
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MSLTQSSLWAETSPTCLVLTVCYTVYLFLYVDDIILTASSPIFISKVISQLSSEFPMSDL
GSLSFFLGIATTRTTSGLFLSQSSFAQEIITRADMIGCNTCNTPADSKSKLATGGDPISD
PTFYRNEGREYGKYNQNTTSELPASIDFKGMGFLMAVLLSLLCLSFGSKITSATTYDVTS
YGAKGDGNTDDSSAFLRAWDDLCGDQSPEPTLIIPSDKTFLISPVAFNGPCKSPTVYVML
LGNITAPKTFDGWKDCVRNHYWIYFTSVQGLKIQGPGQIDGQGSIWWKEEGKTTTNTCNR
PTALHFHSCNGLQLRGTIHINSPKLHMSINGCEDVDVGNLKILAPGDSPNTDGIDISGSS
HVYIHDSKIQTGDDCVAINGGTYDINVTRVLCGPGHGISIGSLGENGGHDTVEQVRVEKC
NITGTKNGLRIKTVPYGTGYARKIVFQDIQLENVQNPIIIDQHYCSNPEDAFCPAPPTAT
AVKVSDVMYTNIYGSSATKQAITFNCSGKYNCTEIVTNEVGITGHDEFSYCQNAQGKFID
TNPPIKCY
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttacacaaagctctttatgggctgaaacaagccccacatgtttggtattaacg
gtttgctacactgtctatctttttctctatgttgatgacatcattctcactgcttcctcc
cctattttcatctcaaaggttatttctcagctttcttctgaatttcccatgtctgacctc
ggatctctctcattctttcttggcattgctaccactcgtaccacttctggacttttctta
tctcaatcttcctttgctcaagagatcattactcgagctgatatgattgggtgcaatact
tgcaacacacccgctgacagcaaaagcaagttggcgactggtggtgatccgatctctgat
cctacattctatcgaaatgaaggtagggagtatggcaagtataatcaaaacacaacatca
gagttacctgcttcaattgatttcaaaggaatgggtttcttgatggcagtcttgttgagc
ttgctttgcttatcatttggctccaaaatcacaagtgctaccacctacgatgtaacatct
tatggtgcaaaaggagatggaaatacagacgactccagtgctttccttcgagcatgggat
gatttatgtggagatcagtcgccagaaccaacattgataataccatcagacaagacattt
ttgataagcccggtggcattcaatggtccatgcaaatcccctactgtatatgttatgctg
ttgggcaacatcactgcaccaaagactttcgatggatggaaagattgtgttcggaatcac
tattggatttacttcacatctgtgcaaggactcaagatccaaggacctgggcaaattgat
ggtcagggttcgatttggtggaaagaggaggggaaaaccacaaccaacacttgcaatcgc
ccaactgctttacattttcattcttgtaatggccttcaattgagaggtacaatacatata
aacagcccgaagctacatatgagtatcaatggttgtgaagatgtagatgttggaaatctt
aaaattttagctcctggggatagtcctaatactgatgggatagacattagtggatcctca
catgtttatatccatgattctaaaattcaaactggtgatgattgtgttgctattaacggt
gggacgtatgatattaatgtaacaagagtgttatgcggaccgggtcatggcataagtatc
ggaagccttggggaaaacggtggtcatgacacagttgaacaagtacgtgtggaaaaatgt
aacatcacaggaacaaaaaacggattacgaatcaaaacagtgccttatggaacgggatat
gctaggaagattgtatttcaggacattcaactggaaaatgttcaaaatccaattataatt
gatcaacattactgtagtaatccggaagatgccttttgcccagcaccgccaacggcgaca
gctgtaaaagtgagcgatgttatgtatacgaatatatatgggtcttcggcaacaaagcag
gctattactttcaattgcagtggaaagtacaactgtactgaaatcgtaacaaacgaagtt
ggaatcacgggacatgatgaattttcttactgccaaaatgctcaaggaaaatttatcgat
accaaccctcctattaaatgttattag
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