Lactuca sativa (garden lettuce): 111886215
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Entry
111886215 CDS
T05352
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111886215
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
111886215
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDS5
Cnd1
HEAT_2
Tudor_5
Motif
Other DBs
NCBI-GeneID:
111886215
NCBI-ProteinID:
XP_023738214
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Position
4:105724289..105735137
Genome browser
AA seq
1915 aa
AA seq
DB search
MAENLQNQLKEVGSKLENPPASKDDLIKLLSQATESLSELDQSPPKALLDSMQPLLNAIV
KPELLKHEDKEVSLLVAICTCEITRITAPEAPYDDDVLKDIFHLYVSTFNGLRDTKDPSF
ERRVIVLDTVAKYRSFVVMLDLECDDLINEMFKTFFTVARDEHHETVITAMETIMAVLLE
ESEEIEEDLLSIILSTLGRDKKDITAAARMLAMNVIKQSAGILEPGIKKFILSSMSGDNS
SSNPQIDYHEVIYDIYRCAPQVLSKIVPNLKRELLTDKIDLRLKAVKLVGDLFSIKGSSI
PQTFHPIFLEFLKKFNDKVVQVRMSVVEYAKLCLLSDPLRTEAPQLLASLSDKLSDDDES
IRKQVVAVISDVASLDLSSISPETIKLLAEHLEDKSVLVKNYTLERLSDIYRTWCLKKIG
GLNVNHDYDWIPGRILRSFFDKDFGPNTIEHILSSSLFPVELSVKDKVKNWVKLFSKFDK
VEVNALEMILEERQRLQLELRKYLSIRETYKDSDASELQKKTTVCIRFMSHCLADPIKAE
ADFQILNQLKDDNIWKILTTLVDPNTSSLQSRSLRDELLKIIDEKHPLYELLSTLFIKSS
YIIFDKDFVKNLLLETEQQKSDGNKLLIQSCMNLLVILSSFSPLLLSGIEEDLVHLLEDY
DDEAIKDGVLHVLAKTGETIREQLGDSSSRLDLILERICLEGSRKQAKYAVHALVAITKD
DVVKSLSVLYKRLVNGLEKRTNLPSVLQSLGCIAQIAMPVFETQESKIEEFIRKNILSCN
HKPVNKAKKSWDNKSGLCSLKIFGIKTLVKSYLPVKDAHLRVGIDELLKDLHNILSFGEI
SKDVESSSVDKAHLKLASAKAIIRLSKHWDKKIPVDLFHLTLRTSEARFPQVRKLFLKKV
HQYIKNRSLDPKYVCAFLLDFRSQKPIREEENQSLSEILEMCEQWKKANGNSSVYILPYL
IHALAHHPSCPNIDECKDVKAYEPIFRKLYIYFSKLAAGNEDGKPGVGLKQEDVISIISV
LRTIKFSKDAVDTNMSKNSYAICDLCLIIIKRLAQKHEDLYESVVPLTLPDELYTPHKKK
EEEKEYENKEDEIEEVNKEDETIEEINKAEKKEDEKIEENNKDEKKEEEVNKEDEKMEEE
NKDEKEEEVNLEEEKKEDEKMEEDSKDEKKEEAINKEDEKMEEDNKDETKEEVSNKEEEN
KDEKMEVDNKEQKKEEINKEDEKKEETSKEDEKMEEDNKDEKMEEGSKHETKEEAINKED
EKMEEDSKDEKKEEVINKEEKKEDEKMEEGSKHETKEEAINKEDEKMEEDNKDEKKEEEI
NKEDEKMEEDDKGEKKVENINKEDQKIEEDKKDENKEHKKIEDEKKEDKTKEDEKIEEDN
KDEKKEDENKDDEKKEEVSTEVTEGRTWLADESVFAHFESFILEANGNISSKVNEDDIMK
DSETDGNEIPLGKVLKRLKAKGSKSRKEVKNGSTPKPKPKPTVETENNNVDIMGMLREIN
SDNLGVSVSTTKFDSSNGHGEIKTEADLKRKGIPEDLTNVPVPKRRRSTTSAKGHKRSSF
ITSGMKGGPTFSNKMDDGDGDDDEDDDGHSDSDDKVSLDRGVIHKEEAMITDEVDLEKPK
TPVDIQKSGNLRKRKRRRVSRLVKCTADATEFKTKDLIGRRIKVWWPMDKEFYEGLVKSY
DHENNKHVVLYDDGDIEVLCLDKERWKLVKSGHKLAERKLMTYSPPPKEGTSKKLKSSGS
SKQTKESTDISPSSMVRGKRTPRQNLNQGQKGVSQRSAYLEIRRSKDPDASMPDIISSKI
DNLDAVEAGAENSDKLEKSRSKENQTTGDAESSSNDSMSSHKNEPSSVQKETKNDDSAPS
ETHGSDSEESGESTDVQTPDGKESSTYDDSDMAGFTDDEPLGVWKARVGKSVEGK
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaatcttcaaaatcagctcaaggaagttggatccaagctcgagaacccaccc
gctagtaaagatgatcttatcaaacttctttcgcaagccacagaatctctctctgagttg
gatcaatcaccaccaaaagcattattggactctatgcagcctcttctgaatgctatagtc
aagccagaattgctaaagcatgaagacaaagaagtttcacttctagttgcaatttgtact
tgtgagattaccagaattacagctcctgaagcaccatatgatgatgatgttttaaaggac
atctttcatttgtatgtaagcaccttcaatgggttaagagataccaaagatccatctttt
gagagaagagtaattgtgttggacactgttgctaagtatagatcatttgttgtgatgttg
gatcttgaatgtgatgatttaatcaacgaaatgttcaaaacatttttcactgttgccaga
gatgagcatcatgaaactgttatcacagcaatggaaacaatcatggctgttcttttggaa
gaaagtgaggaaattgaggaggatcttttatccattattctatctactttaggccgtgat
aagaaagatataactgcagctgcaaggatgcttgccatgaatgttataaagcaaagtgct
ggaatacttgaacctggaattaagaagtttattttatcatcaatgtcaggagataacagt
tcttcgaatcctcaaattgattaccatgaagttatctatgatatttaccgttgtgcccct
caggtcttatcaaaaattgtcccaaaccttaaaagagagctactgacagataaaatagac
cttcgtttaaaggcagtcaaactggtgggagaccttttttctatcaaaggatcttccatc
cctcagacatttcatccaatctttttggagtttttgaagaaatttaatgataaagttgtt
caagtccggatgtcagttgttgaatatgccaagctatgtttattatctgatcctttaaga
acagaagctcctcaattacttgcttccctaagtgacaagttgtcagatgatgatgaaagt
atacgcaaacaagtggttgcagtaatttcagatgtagcatctctggatttatcatccatt
tcacctgaaaccataaagcttctagctgagcaccttgaggacaaatctgttcttgtgaaa
aactataccctagagaggctttcagatatatatagaacttggtgcttgaagaaaattggt
ggtttgaatgtgaatcatgactatgattggattcctggaagaattttaagaagtttcttt
gacaaagatttcggaccaaacacaattgagcacattctatcctcatccctcttcccagtt
gagctttcggtcaaagataaggtcaaaaactgggtcaaactattttcaaaatttgataaa
gttgaggtgaatgctttagagatgatactggaggaaagacaaaggttacaactagagttg
cgaaagtatctttcaattagggagacatataaggacagtgatgcttcagagctccagaag
aaaaccacagtttgtatccgcttcatgtcccactgtttagctgatcccataaaagcagaa
gcagattttcagattcttaatcagttaaaagatgataacatatggaagatcttgacaaca
ttagtggaccccaacactagttctcttcaaagtaggagccttagggatgagttgttaaag
ataattgatgagaagcatccactttatgaacttctaagcactctttttatcaaaagctca
tacataatctttgacaaggactttgtcaaaaatcttcttctagagactgaacaacagaaa
tctgatgggaacaaattgttaattcagtcttgcatgaatctacttgtgatcctttcaagc
ttcagtcctttgctgctaagtgggatagaagaagatttggtgcatcttctagaagattat
gatgatgaggcaatcaaagatggtgttttgcatgttcttgcaaagactggtgaaacaatt
cgtgaacaattgggagattcatcgagtagattagaccttatacttgaaagaatatgttta
gaaggtagtaggaagcaggccaagtatgctgtacatgcattggtggctataacaaaagat
gatgtggtcaagtcactttcggttctatataagcgactagtgaatgggctagagaaaagg
acgaatttgccctctgtgctacagtctttggggtgtatagcacagattgccatgccggtt
tttgaaacgcaagagagtaaaatcgaagaatttattagaaaaaatatcttaagttgcaat
cataaaccagtaaataaggcgaaaaaatcttgggataacaaaagcggactttgttcatta
aagatatttggcattaaaacgctggtgaaaagctatcttcctgtgaaagatgcacatctt
cgtgttggtattgatgaactgttaaaagatctccataatatactttcttttggagaaatc
tcaaaagatgtggaatcaagttctgttgataaggcccatttgaagctagcttcagctaag
gcaattattcgtctgtcaaaacattgggataaaaagattccagttgatctatttcacctc
accttgagaacatcagaggctagatttcctcaagttaggaaactatttctcaaaaaagta
catcagtacataaagaataggagtttggatcccaaatatgtttgtgctttcttgttagat
ttcagatcacagaaacctattcgggaagaggaaaatcaaagtcttagtgaaatccttgag
atgtgtgagcaatggaagaaggccaatgggaattcctcagtgtacattcttccctacttg
atccatgcacttgctcatcatccttcatgtccaaacattgatgaatgcaaagatgtcaaa
gcatatgaacctatattcaggaagttgtatatatatttttctaaattagcagcaggaaat
gaagatggcaagcctggagtagggctaaaacaggaagatgtaatttcgataatttctgtt
cttcgaactatcaagttctcaaaagatgctgtagatacaaacatgtcaaagaactcgtat
gcaatctgtgatctttgcttgataatcatcaaacggttggctcaaaaacatgaagatctt
tatgaatcggttgtgcctcttactttgcctgatgagttgtatacaccacacaagaaaaag
gaagaggaaaaagaatacgagaacaaagaagatgagatagaagaggttaacaaagaagat
gagacgatagaagaaattaacaaagctgagaaaaaagaagatgagaagattgaagaaaat
aacaaagatgagaaaaaggaagaagaagttaacaaagaagatgagaagatggaagaagag
aacaaagatgagaaagaagaagaagttaacctagaagaagagaaaaaagaagatgagaag
atggaagaagatagcaaagatgagaaaaaagaagaagcaattaacaaagaagatgagaag
atggaagaagataataaagatgagacaaaagaagaggtaagtaacaaagaagaagagaat
aaagatgagaagatggaagtagataacaaagagcagaaaaaagaagaaattaacaaagaa
gatgaaaaaaaagaggaaactagcaaagaagatgagaagatggaagaagataacaaagat
gagaagatggaagaaggtagcaaacatgaaacaaaagaagaagcaattaacaaagaagat
gagaaaatggaagaagatagcaaagatgagaaaaaagaagaagtaattaacaaagaagag
aaaaaagaagacgagaagatggaagaaggtagcaaacatgagacaaaagaagaagcaatt
aacaaagaagatgagaagatggaagaagataacaaagatgagaaaaaggaagaagaaatt
aacaaagaagatgagaagatggaagaagatgataaaggtgagaaaaaagtagaaaacatt
aacaaagaagatcagaagatagaagaagataaaaaagatgagaacaaagaacataagaaa
atagaagacgagaagaaagaagataagacaaaagaagatgagaagatagaagaagataat
aaagatgagaaaaaagaagatgagaacaaagatgacgagaaaaaagaagaggttagcaca
gaggtgacagaaggtcggacatggttggctgatgagagtgtttttgcacactttgagtcc
tttatcttggaagctaatggcaatatttcatcaaaagtcaatgaggatgatatcatgaag
gatagtgaaacagatggaaacgagattcctttaggaaaagtgttgaaacgtttaaaagcc
aaaggatccaagtcaagaaaggaagtgaaaaacgggtccacacccaaacccaagcccaaa
cccactgttgaaactgaaaataataatgttgatatcatgggaatgttgagagaaataaat
tcagataatttgggtgtatctgtatcaacaacaaaatttgattcaagcaatggccatggt
gaaattaaaacagaagcagatttaaaaaggaaaggaatccctgaggatctaaccaatgtc
cctgtacccaagcgtaggaggtcaacaacttctgcaaaagggcataaaaggtcatctttt
ataaccagtggaatgaagggtgggcccactttcagtaataaaatggatgatggtgatggt
gatgatgatgaagatgatgatggacacagtgattcagacgataaagttagtttggataga
ggtgttatacataaagaagaggccatgattactgatgaagttgatttggagaagcctaaa
acgcctgtggatattcagaaatctgggaatctcaggaagcgaaaacgaagaagggtttca
cgattagtaaagtgcactgcggatgcaaccgaatttaaaaccaaagacttaattggaaga
cgcatcaaagtttggtggcctatggacaaggagttttatgagggcttagtgaagtcttat
gatcatgaaaacaacaaacatgtggtattatatgatgatggagatattgaagtgctatgt
ttggataaggaaaggtggaaacttgttaagagtgggcacaaacttgcagagaggaagctc
atgacatatagtccacccccaaaagaaggaacttctaagaagcttaagtcatcgggtagc
tccaagcaaacaaaggaatcaactgacatatcaccatcatctatggtaagaggcaaaaga
accccaagacagaatttgaaccaagggcaaaaaggggtatcacaaagaagtgcatatttg
gaaattcgcagaagcaaagatcctgatgcatccatgcctgatatcatatcatctaaaatc
gacaatttggatgcagttgaagcaggtgcagagaattcagacaagttagaaaagtcaaga
tccaaggagaaccaaacaacaggagatgcagagagcagctcaaacgattccatgtcttct
cataaaaacgaacctagttctgtgcagaaagaaaccaaaaatgacgattctgcccctagt
gagacacatggatcagattcagaagaaagtggcgagtcaacagatgtacaaacaccagat
ggaaaagaatcatcaacttatgatgattctgacatggcaggattcacagatgacgaacct
cttggtgtgtggaaggctcgagttgggaaatctgttgaaggcaaataa
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integrated database retrieval system