KEGG   Lipotes vexillifer (Yangtze River dolphin): 103087227Help
Entry
103087227         CDS       T03090                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
lve  Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03410  Base excision repair
Module
lve_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:lve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    103087227 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lve03400]
    103087227 (LIG3)
Enzymes [BR:lve01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103087227 (LIG3)
DNA repair and recombination proteins [BR:lve03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     103087227 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 103087227
NCBI-ProteinID: XP_007446641
UniProt: A0A340WDH7
LinkDB All DBs
Position
Un
AA seq 1013 aa AA seqDB search
MTLAFKILLPPTLRALSQKELCLFREQHHWPDIRQFSQWSETVLRGHLLLQRRKPVVSFQ
ESNLRPRATCLDFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGMCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQH
IADLSSKAANTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSGFSAKPNNSGEAH
SIPTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMARDLEQGDVSETIRVFFEQ
SKSFPPASKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLHDVVERVLRNEQEVKKEPGRKRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDYFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDNKKGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLFERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIQEGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTQIRDDKDWKSATNLPQLKELYQLSKERAAFAI
VARDEGSSTTGGSSGENEGISGPAVSHEAPRTSPKQPSASAKKAGGKLSSSNSKGGNLLG
SHPELSPAGNKLAAKPSPVKVGEKRKAPDETPCQAKVLLDIFTGVRLYLPPSTPDFSRLR
RYFVAFDGDLAQEFDVASATHVLGSRDKNPEAQQVTPEWIWACIRKRRLVAPC
NT seq 3042 nt NT seq  +upstreamnt  +downstreamnt
atgactttggcttttaagatcctcttaccaccaactctccgtgcgctcagccaaaaagaa
ctgtgcctattccgagaacaacatcactggcctgacataagacagttcagccagtggtca
gaaacagttcttcgtggacaccttctcctccagagaagaaagcctgttgtgtcattccag
gaaagcaatctaagaccacgtgccacctgccttgatttcttgccagggtcgcatgtggga
ctctgcagtggcccctgtgagatggcagagcaacggttctgtgtggactatgccaagcgt
ggcacagccggctgcaaaaaatgcaaagaaaagattgtaaagggcatgtgccgaatcggc
aaagtggtgcccaatcccttttcagagtcagggggtgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggacctc
acagagctggaaggctgggaagagctggaagataatgagaaagaacagatcagccagcac
attgcagatctgtcttccaaggcagcaaacacaccaaagaagaaagctgttgtccaggct
aagttgacagccactggccaggtgacatctccagtgaaaggtgcctcatttgtcaccaat
accaatccccggaaattttctggcttttcagcgaagcccaacaactctggggaagcccac
tcaatacctacccctaagacaagtctgtcctcaagcaaatgtgaccctaagcacaaggat
tgtctgctacgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagctacaac
acgaagacccagatcatccaggacttccttcagaaaggctcagcaggagatggtttccac
ggtgacgtgtacctaactgtgaagctgttgctgccgggtgttattaagagtgtttacaac
ttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactcagatgat
atggcacgagacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtctttccccccagcttccaagagccttcttaccatccaggaggtggatgaattc
ctcctgcggctctccaagctcaccaaggaggatgagcagcaacaggccctgcaggacatc
gcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaagcatgtgttagatgccctagaccctaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcacgatgtggtggagcgggtcctccgcaacgagcaggag
gtgaagaaggagccaggccggaaacgagctctgagtgtccaggcctcactgatgaccccg
gtgcagcccatgctggccgaggcctgcaagtccatcgagtacgcgatgaagaagtgtccg
aatggcatgttctctgagatcaagtatgatggggagcgagtccaggtgcataagaacggg
gactacttcagctacttcagccgcagtctcaagccagtcctgccgcacaaggtggcccac
tttaaggactacatcccccaggctttccccgggggccacagcatgatcttggactctgag
gtgctcctgatcgacaacaagaaaggcaaaccactgcccttcgggactctgggagtgcac
aagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatctacttc
aatgatgtcagcttgatggataggcctctgtttgagcggcggaagtttcttcacgataac
atggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcacaaaagcttct
gacttggctgacatgatcaaccgggtgatccaagaggggttggaagggctggtgctgaag
gacgtgaagggtacatatgagcctggaaagcgtcattggctgaaagtgaagaaggactat
ttgaacgagggggccatggctgacacggctgacctggtggtgcttggggccttctatggg
caagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccaagtagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccacgatgacgcaacgcttgcccgc
ctacagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccagctgg
ctgaaagtcaataagatctactatcctgacttcatcgttccagacccgaagaaagctgcg
gtgtgggagatcacaggggctgaattctcgaaatctgaggcacacacagctgatgggatc
tccatccgtttccctcgctgcacccaaatccgtgatgataaggattggaagtctgccact
aacctcccccaactcaaggaactgtaccagctctccaaggagcgggcggctttcgccata
gtggccagagatgaggggagctccactacagggggcagcagcggagagaacgagggaatc
tcagggccagctgtgtctcacgaggccccgagaacctcccccaagcagccctccgccagt
gccaagaaggcaggagggaagctgagtagctccaacagcaaaggcggtaatcttcttggt
tctcatcctgagctctctcctgcaggcaacaagctggctgcaaagccttcccctgtgaaa
gtgggagagaagcggaaggctcctgatgagactccatgccaagcaaaggtgctgctggac
atcttcaccggggtgcggctctacctgccgccctccacgccagacttcagccgtctccga
cgctactttgtggcattcgatggggacctggcgcaggaatttgacgtggcctcagccaca
catgtgctgggtagcagggacaagaaccctgaggcccagcaggtcaccccagagtggatc
tgggcctgtatccggaaacggagactggtagctccctgctag

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