Yoonia vestfoldensis: LOKVESSMR4R_00985
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Entry
LOKVESSMR4R_00985 CDS
T04854
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03420
Nucleotide excision repair
lvs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOKVESSMR4R_00985 (uvrD)
03430 Mismatch repair
LOKVESSMR4R_00985 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvs03400
]
LOKVESSMR4R_00985 (uvrD)
Enzymes [BR:
lvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOKVESSMR4R_00985 (uvrD)
DNA repair and recombination proteins [BR:
lvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOKVESSMR4R_00985 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LOKVESSMR4R_00985 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ARU00314
UniProt:
A0A1Y0E9M5
LinkDB
All DBs
Position
976024..978444
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AA seq
806 aa
AA seq
DB search
MGHRWRYVWGMSDYSEDDAFEAAVPLSQRAMARPAMPYLDGLNPAQRQAVETLDGPVLML
AGAGTGKTKALMTRIAHLIFKGRANPDQVLAVTFTNKAAKEMRARLEKEPFGIETPMRWM
GTFHSISAKLLRRHAELVGLQSSFTILDSDDQLRLLKQLVVASDLDEKRWPPRMLAGIID
GWKNKALTPDKVPVAESGAFDGRGVDLYAAYQRRLRDLNAVDFGDILLHMVTIFQTHPDV
LHQYQTRFRYILVDEYQDTNVAQYLWLRLLAAGHKNICCVGDDDQSIYGWRGAEVGNILR
FEADFPGAHVVRLEENYRSTPHILAAASGVIAANKGRLGKTLFTSVKEGEKVRLIGHWDG
EEEARWIGEEIEASQRGTRGMAPLGLDNMAILVRASHQMRAFEDRFLTIGLPYRVIGGPR
FYERMEIRDAMAYFRLAVSPADDLAFERIVNTPKRGLGDKAVQTIQRTARANDVPLVEGA
RLVCQGRLLGGKGLKELTELVAGLDRWHAQVRAEADTHVELAEMILDESGYTGFWQNDKT
PEAPGRLENLKELVKALENFENLQGFLEHVSLIMDNETEEQGEKVSIMTLHAAKGLEFPA
VFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEELCTISFAANRRVYGQWQSQ
MPSRFIDELPADHVEVLTPPGLYGGGYGAAGMAASASPAIMGAAGSDLHQKAHDADVYNS
PGWRRLQTRSQQRGMAMPSEARNMTIDATAISAFCVDERVFHQKFGYGNVLAIEGDKLEI
AFDKAGTKHVVGRFIVSADAADDVPF
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggggcatcgttggcgctatgtctgggggatgagtgattattccgaagatgacgccttt
gaggcggcggtccctttgagccagcgcgccatggcgcgaccggcgatgccctatcttgac
gggctgaaccccgcacagcgccaggcagtggaaacgctggacgggcctgtgctgatgctg
gcaggcgcggggaccggcaagaccaaggcgctgatgacgcgtatcgctcaccttattttt
aaaggtcgcgcaaatcctgatcaggttttggctgtgaccttcaccaataaggctgccaag
gaaatgcgggcgaggctcgagaaagagcccttcggcatcgaaacaccaatgagatggatg
ggcacttttcattcaatcagcgcgaaattgctgcgccgccacgcggaattggtcggcctg
caatcgagttttaccattctggacagtgatgaccaattgcggctgctcaaacaattggtg
gtggcctcggatctggatgaaaagcgctggccgccgcgcatgctggcggggatcatcgat
ggctggaagaacaaggcgctaacgcctgacaaggtgcctgttgcggaaagcggcgctttt
gatggcaggggcgtggatctttatgccgcctatcagcgccggctgcgcgatctcaatgct
gtcgatttcggcgatatcctgctgcatatggtcacgattttccagacacatcccgatgtg
ctgcaccaatatcagacgcggtttcgctatattctggtggatgaatatcaagataccaat
gtggcccaatatctctggctgcgcctgctggcggcggggcataagaatatctgctgtgtg
ggtgatgatgaccagtcgatctatggctggcgcggcgccgaggtcggcaatatcctgcgg
ttcgaggcggatttccccggcgcccatgtagtgcggctggaagaaaattaccggtccacc
ccgcatatccttgccgctgcttctggggtgattgccgccaataaagggcgcttgggcaag
accttgttcacctccgtcaaagagggcgagaaggtccgcctgatcggccattgggatggc
gaggaagaggcccgctggatcggcgaggagattgaagccagccagcgtggcacccgtggc
atggcgcccttggggctggacaatatggcgatccttgtgcgcgccagccaccagatgcgc
gctttcgaggatcggttcctgaccatcggcctgccctaccgcgtcatcggggggccgcga
ttctatgaacgaatggaaatccgcgatgcgatggcctatttccggctggccgtgtcgccc
gccgatgatctggcctttgaacgcatcgtgaatacgccaaagcggggcttgggtgacaag
gcggttcagacgatccaacggaccgcccgcgccaatgacgtgccgctggttgaaggcgcg
cggctggtctgccaagggcggctgctgggcgggaaagggttgaaagagctgaccgaattg
gtcgcaggtctggaccgttggcatgcgcaggtccgcgccgaggcggatacccatgtggaa
ctggcggagatgatcctcgacgaatccggctacaccgggttttggcagaatgacaagacg
ccagaggcgccgggccggcttgaaaacctcaaggaactggtcaaggcgctggagaatttc
gagaatctgcaagggtttctcgaacatgtcagcctgatcatggacaatgaaaccgaggag
cagggcgaaaaggtcagtatcatgaccctgcatgcggccaaggggctggaatttcccgcc
gtattcctgccgggctgggaagacgggctgttcccctcgcagcggtctatggatgaaagc
gggctgaaagggttggaggaagagcgccgcctggcctatgtcggcatcacgcgcgccgaa
gagctatgcaccatctctttcgccgccaaccgccgggtttatggccaatggcaatcgcag
atgccgtcgcggttcatcgacgaattgcccgctgatcatgtcgaggtgctgaccccgccc
ggtctttatggcggcggttacggggcggcggggatggcggccagcgcctcgcccgcgatc
atgggggcggcggggtcggatctgcaccaaaaggcgcatgatgccgatgtctataattca
ccgggctggcggcggttgcagacccgcagccagcagcgcggcatggccatgccgtccgag
gcgcgcaacatgaccatcgacgccaccgccatatcggccttttgcgtggatgaaagggtg
tttcaccagaaattcggctatggcaatgtgctggcaatcgaaggtgacaagctcgaaatc
gcgtttgacaaggcgggcaccaaacatgtggtgggccgtttcatcgtcagcgccgatgcg
gcggatgatgtgccgttctaa
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