Leifsonia xyli subsp. xyli CTCB07: Lxx17280
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Entry
Lxx17280 CDS
T00190
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lxx17280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxx03400
]
Lxx17280 (mfd)
Enzymes [BR:
lxx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lxx17280 (mfd)
DNA repair and recombination proteins [BR:
lxx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Lxx17280 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAT89487
UniProt:
Q6ADQ9
LinkDB
All DBs
Position
complement(1791299..1794913)
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AA seq
1204 aa
AA seq
DB search
MRLQGLISALQRASTYGDALASATRDADFSLTDGLRVPLLAGLLARRAEQGASQASLVIT
ATGRESESVRAALPCVLTGAEVVEFPAWETLPHERLSPSPEIVGKRLVALRRLSDWTAAG
SATPFVLVASVRAALQPIADNLTDYDRVELVAGARGYDLAGLVAHAVDLAYTRVDMVTRR
GEFAVRGGILDVFPPTADHPYRVEFFGDEVEQIRAFSVADQRSLPEPIASVGLPPSRELL
LSESVRQRAREMQHEFPNLSSMFAKIAEGIPVEGMESLAPALADRLVPLTHYLPAGAAVA
VMSPERVASRAVSLAETNREFLSAAWSAATVGAAAPIDLAAGDFLTLQQLRDDVTFSRPG
HPNPDHPWWTFSGFQANDALPEERELEEHLQIRVEAAAVPRFQGNVTGAVEHVAGLLKRG
WRVIIVAEGAGLVERAAQVLAEAELPARPLDAFPADPEPGVASLIRATVEHGFELEEAKL
ALLSEGEFYGRTVGYDSRQVKKLATRRKSVVDPLQLKPGDHVVHETHGIGRFVELTQREV
SSGGRNAVKSKREYLVLEYAPSKRGYPGDKLYVPTDQLDLLTRYVGGEAPQLSKMGGSDW
AAAKGRARRAVRDIAVELVKLYSARMSSKGHSFAPDTPWQRELEEAFPFAETPDQLQTID
EVKADMERPIPMDRLISGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVKQHAETFM
ERFAGFPVHLRQLSRFQTDREARETLRGLAGGTVDIVIGTHRILSDGVTFKDLGLVVIDE
EQRFGVEHKDRLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFV
GPYSERQVGAAIRRELLREGQVFFVHNRVGSITSVAAKLAELVPEARIAYAHGKMNEHAL
EQVVVDFWERKFDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERA
YAYFLWDENKPLSETAHDRLSTIAANNDLGSGMQVALKDLEIRGAGNLLGGEQSGHIAGV
GFDLYLRMIGEAVSAFRGEVAEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSAATA
PAAKDGQIDLVLEELTDRYGEPPAPVLNLVAVSRLRRTAQRSGLGEVVAMGSQLRLAPAA
LPESLQVRLQRMYPGSKYHAAPKVAMVPLPRVNGEAPEDAEAIAWVATLLAALFPVTEPK
PAAA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtgagactgcagggcttgatctcggcgcttcagcgcgcctccacctacggcgacgctctc
gcctccgccacccgagacgccgacttctccctcacggacgggctccgcgtgccgctgctg
gccggtttgctcgcgcgtcgcgccgaacagggcgcttcgcaggcgtcgctcgtgatcacg
gccaccggccgcgagtccgagtcggtgcgcgcggcgctgccctgcgtgctgaccggcgcc
gaggtcgtcgagttcccggcgtgggagaccttgccgcacgagcggctcagcccgagtccg
gagatcgtcggcaagcgtcttgtcgccctgcggcggctgagcgattggacggccgcgggc
agcgcgacgcccttcgtgctcgtcgcctcggtccgcgctgctttgcagccgatcgccgac
aacttgacggactacgaccgtgtcgaactggtggccggcgcgcgcggatacgatctcgcg
ggcctcgtcgcacacgcggtggacctggcgtacacgcgggtcgacatggtcacccgtcgc
ggcgagttcgcggtgcgcggcggcatcctggacgtcttcccgcccacggccgaccacccc
taccgggtcgagttcttcggcgacgaagtcgagcagatccgcgcgttctcggtggcggat
cagcggtcgctgcccgagcccatcgcctcggtcggcctgccgcccagccgcgagcttctg
ctgagcgagtccgtgcgacagcgggcgcgtgagatgcagcacgagttcccgaacctgtcg
tccatgttcgccaagatcgctgagggcatccccgtcgaggggatggagtcgctcgcgccg
gcgttggccgaccgcctcgtccccctcacccactacctcccggcgggcgcggcggtcgcc
gtgatgtcgccggaacgggtcgcctcccgcgcggtgagtctcgccgagaccaaccgcgag
ttcctctctgcggcgtggagtgccgccacggtcggggcagccgcgcccatcgacctcgct
gcgggagatttcctcacgcttcagcagttgcgggatgacgtcacgttcagccggcccggt
cacccgaaccccgaccacccctggtggaccttctccggcttccaggcgaacgatgcgctg
ccggaggagagggagctcgaagagcaccttcagatccgcgtcgaagcggcggcggttccc
cgtttccagggcaatgtcacaggcgcggtcgagcatgtggccgggttgctgaaacgcggc
tggcgcgtgatcatcgtggccgaaggcgctggcctcgtggagcgggccgcgcaggtgctc
gccgaagcggagctgccggcgcggccgctggacgcgttccccgccgacccggagcccggc
gtcgcctctctgatccgcgccaccgtcgagcacggattcgagctggaggaggcgaaactc
gcgctgctcagcgagggagagttctacggccgcacggtcggctacgactcccggcaggtc
aagaagctcgccacccggcgcaagagcgttgtggacccgctgcagctgaagccgggcgat
cacgtcgtccacgagacgcacggcatcggccggttcgtggagctgacccagcgcgaggtg
tccagcggcggccgcaacgccgtgaaatcgaagcgcgagtacctcgtgctggagtacgcc
ccgtccaagcgcggctacccgggcgacaagctctacgtgcccacggatcagctcgacctg
ctcactcgctatgtcgggggcgaggccccgcagctgtcgaagatgggcggcagcgactgg
gccgccgcgaagggccgcgcccggcgtgcggtgcgcgatatcgcggtggaactggtgaag
ctctactcggcgcgtatgtccagcaaggggcactctttcgcgccggacacaccctggcag
cgcgaattggaggaagcgttccccttcgcggagacgcccgatcagctgcagaccatcgac
gaggtcaaagccgatatggagcggccgatcccgatggacaggctcatctcgggcgatgtc
ggcttcggcaaaacggagatcgccatccgggccgccttcaaagccgtgcaggacggcaaa
caggtggccgtgctcgtaccgaccaccctgctggtcaagcagcacgccgagacgttcatg
gagcgtttcgccggcttcccggtgcatctgcggcagctcagccggttccagacggacagg
gaggcgcgagagactctgcgcggcctggccggcggcaccgtcgatatcgtcatcggcacg
caccgcatcctgtccgacggggtgactttcaaggatctcgggcttgtcgtgatcgacgaa
gagcagcggttcggggtcgagcacaaggatcggctgaagaagctgaagacgaatgtcgac
atcctggcgatgagcgccacgcccatcccacgcacgctggagatggcggtgaccggcatc
cgcgagatgtccacgctcgcgacgccgccggaggacagacacccgattctcaccttcgtc
ggcccctactcggagaggcaggtcggtgcggcgatccgccgcgagctgctgcgggagggg
caggtgttcttcgtccacaaccgcgtcggctcgatcacgagcgtggccgccaagctcgcc
gagctggtcccggaggcgcgcatcgcctacgcgcacggcaagatgaacgagcacgccctg
gaacaggtcgtggtcgacttctgggagcgcaagttcgatgtcctcgtctcgaccaccatc
atcgagaccggcctcgacatctcgaacgccaacaccatcatcatcgaccgagccgacaag
tacggcctcagccagctccaccagctgcgaggccgagtcggccgcgggcgggagcgcgcc
tacgcctacttcctctgggacgagaacaaaccgctcagcgaaaccgcccacgatcgcctg
tccaccatcgccgccaacaacgatctcggcagtggcatgcaggtcgcgctcaaagacctg
gagatccgcggcgccggcaacctgctgggcggcgagcagtccggtcacatcgccggggtc
ggcttcgacctctacctccggatgatcggcgaagccgtctcggctttccggggcgaggtc
gccgaagggcagaccgaattgcgtttggagctgccggtggacgctcgcattcccgaggag
tacgtcgacagtgagcggttgcgcctggaggcgtaccagaagctctctgccgcgacagcg
ccggccgcgaaggacggccagatcgacctcgtgctggaggagctgaccgaccgctacggc
gagccgcccgcgcccgtgctgaatctcgtcgccgtctcgcgactgcggcgcacagcgcag
cggtcggggctcggcgaggtcgtcgcgatgggctcccagctgcgattggcccccgccgcg
ctgccggagtcgctgcaggtgcgtctccagcgtatgtaccccgggtccaagtatcatgcg
gcgccgaaggtggcgatggtccctctgccccgcgtgaacggggaggcgccggaggacgcc
gaggcaatcgcgtgggtggcgaccctgctggctgcgctgttcccggtgacggagcccaaa
cccgccgccgcctga
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