Lysobacter alkalisoli: FKV23_11855
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Entry
FKV23_11855 CDS
T06167
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lyj
Lysobacter alkalisoli
Pathway
lyj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FKV23_11855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyj03021
]
FKV23_11855 (rpoB)
03400 DNA repair and recombination proteins [BR:
lyj03400
]
FKV23_11855 (rpoB)
Enzymes [BR:
lyj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FKV23_11855 (rpoB)
Transcription machinery [BR:
lyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FKV23_11855 (rpoB)
DNA repair and recombination proteins [BR:
lyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FKV23_11855 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
DOCK-C2
DivIC
Motif
Other DBs
NCBI-ProteinID:
QDH70700
UniProt:
A0A514BTI8
LinkDB
All DBs
Position
complement(2700128..2704294)
Genome browser
AA seq
1388 aa
AA seq
DB search
MTTASTSYSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYRGFLQEHIAWDKREDKGLHA
ALKSVFPIASYSGNAALEYVGYKLGDPPFDERECRNRGLSYGAPLRVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
YSARIIPYRGSWLDFEFDPKDGLFTRIDRRRKLPVTILLRALGYNNEEMLAEFFEVNTFH
IEPEEGVQLELVPERLRGETLDFDLADGDNVIVEAGRRITARHVKQLEASGIEALAVPDA
YLVGRILSHDVVDTSTGELIASANDEITEEQLELFRKAGIETVGTIWVNDLDRGPYISNT
LRIDPSKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRIG
RKETVGASVLYDAKYYADRKDEESKRLVKECGDSSDILDVIKVLTEIRNGRGVVDDIDHL
GNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGS
SQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPN
IGLINSLAVFARTNRYGFLETPYRKVVDGKVTDEIEYLSAIEENEYVIAQANAEQDEKGR
LTAQFVACRHAGESLLKPPAEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQ
AVPTLRSQKPLVGTGIERAVARDSGVTVNARRGGVVEQIDAGRIVVKANEDEISGETDAG
VDIYSLIKYTRSNQNTCINQRPLVTVGDVIARGDVLADGPSTDIGELALGQNMLVAFMPW
NGYNFEDSILLSERVVEEDRYTTIHIEELTAVARDTKLGPEEISADIPNVSESALNRLDE
SGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGT
VIDVQVFTRDGIEKDKRAKLIEESEIRRVKKDFDDQFRILEAAIYSRLRNQLIGKVANGG
PGLKKGDTVTSLVLDGLSRKDWFSLRMKDEDAVEAIERAQKQIEVHEQEFEKRFADKRGK
ITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVISNIVPVEDMPYMANGETID
IVLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAKVAELRKFLDEIYNHDSKL
REQRVDLKQFSDEELLKLARNLIDGVPMATPVFDGAAESEIKRMLELADLPSSGQTQLYD
GRTGEAFDRHTTVGYMHVLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLA
INMELEED
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagcttctacgtcgtattcgttcaccgagaagaagcgcatccgcaaggatttc
ggcaagcgcaagtcgatccttgaggtcccgttcctgctcgcgatccaggtcgattcctat
cgcggattcctgcaggagcacatcgcttgggacaagcgcgaggacaagggcctgcacgcc
gcgctgaagtcggtgttcccgatcgccagctatagcggcaatgccgcgctggagtacgtg
ggctacaaactcggcgacccgccgttcgacgagcgcgagtgccgcaaccgcggcctgagc
tacggcgccccgctgcgcgtgaccgtgcgcctggtcatctacgaccgcgagtcgtcgacc
aaggcgatcaagtacgtgaaggagcaggaggtctacatgggcgagatcccgctcatgacc
gacaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgt
tcgccgggcgtgttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctg
tacagcgcccgcatcattccctaccgcggctcctggctggacttcgagttcgacccgaag
gatggcctgttcacccgtatcgaccgtcgccgcaagctgccggtcacgatcctgctgcgc
gccctgggctacaacaacgaggagatgctggccgagttcttcgaggtcaacaccttccat
atcgagccggaagagggcgtccagctggaactggtgcccgagcgcctgcgtggcgagacc
ctggacttcgacctggccgacggcgacaacgtgatcgtcgaagccgggcgccgcatcacc
gcgcggcatgtcaagcagctcgaggcttccggcatcgaggcgctggccgtgcccgacgcc
tacctggtcggtcgcatcctctcgcacgacgtcgtcgacacctctaccggcgagttgatc
gcctcggccaacgacgagatcaccgaggagcagctggagctgttccgcaaggccggcatc
gagaccgtcggcacgatctgggtcaacgacctcgaccgtggcccgtacatctccaacacc
ctgcgcatcgacccgtccaagacccagctcgaggctctggtcgagatctatcgaatgatg
cgcccgggcgagccgccgaccaaggatgccgcccagaacctgttccacaacctgttcttc
acgtttgagcgctacgacctgtcggccgtgggccggatgaagttcaaccgtcgcatcggt
cgcaaggagaccgtgggcgcctcggtgctttacgacgccaagtactacgccgaccgcaag
gacgaggagtccaagcgtctggtcaaggagtgcggcgattcgtccgacatcctcgacgtg
atcaaggtcctgaccgagatccgcaacggtcgtggcgtggtcgacgatatcgaccacctg
ggcaaccgtcgcgtgcgttcggtcggcgagatggccgagaacgtgttccgcgtgggcctg
gtccgcgtcgagcgggcggtcaaggaacgcctgtcgatggccgagtccgagggcctgacc
ccgcaggaactgatcaacgccaagccggtcgcggccgcgatcaaggagttcttcggctcc
tcgcagctgtcgcagttcatggaccagaacaacccgctgtcggaggtcacccacaagcgc
cgcgtctccgcgctcggcccgggcggcctgacccgcgagcgcgccggtttcgaggtgcgc
gacgtgcatccgacccactacggtcgcgtctgcaccatcgaaacgccggaaggcccgaac
atcggcctgatcaactcgctggcggtgttcgcccgcaccaaccgatacggcttcctggag
acgccgtaccgcaaggtcgtggacggcaaggtgaccgatgagatcgagtacctgtcggcg
atcgaggagaacgagtacgtcattgcgcaggccaacgccgagcaggacgaaaagggccgc
ctgaccgcccagttcgtcgcctgccgccacgccggcgagtcgctgctcaagccgccggcc
gagatccacttcatggacgtctcgccgatgcagaccgtgtcggtcgctgccgcgctggtg
ccgttcctggagcacgacgacgccaaccgtgcgttgatgggcgcgaacatgcagcgtcag
gccgtgccgacgctgcgctcgcagaagccgctggtcggtaccggcatcgagcgcgcggtc
gcgcgcgactcgggcgtgaccgtgaatgcgcgtcgtggtggtgtggtcgagcagatcgac
gccggccgcatcgtggtcaaggccaacgaggacgagatttccggcgaaaccgatgccggc
gtcgacatctattcgctgatcaagtacacccgctcgaaccagaacacctgcatcaaccag
cgtccgctggtgaccgtgggcgacgtgatcgcgcgtggcgacgtgctggccgacggtcct
tcgaccgacatcggcgagctggccctgggccagaacatgctggtcgcgttcatgccgtgg
aacggctacaacttcgaggactcgatcctgctctccgagcgcgtggtcgaggaggaccgt
tacaccacgatccacatcgaggaactgaccgccgtcgcccgcgacaccaagctggggccg
gaggaaatttccgccgacatcccgaacgtctccgagagcgccctcaaccgcctcgacgag
tctggcgtggtctacatcggcgccgaggtgcgtgccggcgacatcctggtcggcaaggtc
acgccgaagggcgagagtcagctgaccccggaagagaagctgctgcgcgcgatcttcggc
gagaaggccagcgacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcacc
gtcatcgacgtgcaggtgttcacccgcgacggcatcgagaaagacaagcgcgccaagctg
atcgaggagtccgagatccgccgcgtcaagaaggacttcgacgaccagttccgcatcctt
gaagcggccatctacagccgcctgcgcaaccagctgatcgggaaggtcgccaacggcggc
cccggcctgaagaagggcgacaccgtcaccagcctggtgctggatggtctgtccaggaag
gactggttcagcctgcgcatgaaggacgaggacgcggttgaggcaatcgagcgcgcccag
aagcagatcgaggtccacgaacaggagttcgagaagcgcttcgccgacaagcgcggcaag
atcacccagggtgacgaccttgccccgggcgtgctgaagatggtcaaggtgttcctggcg
gtgaagcgccggatccagccgggcgacaagatggccggccgtcacggcaataagggcgtg
atctccaatatcgtgccggtcgaggacatgccgtacatggccaacggcgagacgatcgac
atcgtgctcaatccgctgggcgtgccgagccgcatgaacatcggccagatcctcgaggtg
cacctgggctgggctgccaagggcctgggccggaagatccaggcgatgatggaggcgcag
gccaaggtggccgagttgcgcaagttcctcgacgagatctacaaccacgacagcaagctg
cgcgaacagcgcgtcgacctcaagcagttctccgatgaggagctgctgaagctcgcgcgc
aacctcatcgacggcgtgccgatggcgaccccggtgttcgacggtgccgccgagtccgag
atcaagcggatgcttgagctcgctgacctgccgagcagcggccagacacagctgtacgac
ggccgcaccggcgaggcgttcgaccgccataccacggtcggttacatgcacgtgctgaag
ctgaaccaccttgtcgacgacaagatgcatgcccgttcgactggcccgtactcgctcgtc
acccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggtgagatggaa
gtctgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaag
tccgacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggcgagtacgag
atggtggccggcatgccggagtccttcaacgtactggtgaaggaaatccgctcgctcgcg
atcaacatggagctggaagaagactga
DBGET
integrated database retrieval system
