Lysinibacillus sp. YS11: LBYS11_03365
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Entry
LBYS11_03365 CDS
T05299
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBYS11_03365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_03365
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBYS11_03365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBYS11_03365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_21
AAA_29
RsgA_GTPase
nSTAND1
nSTAND3
AAA_22
APS_kinase
DnaJ_CXXCXGXG
AAA_18
ATPase_2
AAA_33
AAA_25
NACHT
Viral_helicase1
BCA_ABC_TP_C
cobW
MMR_HSR1
NB-ARC
MeaB
PRK
Septin
NTPase_1
MobB
Motif
Other DBs
NCBI-ProteinID:
AUS85426
LinkDB
All DBs
Position
733197..736064
Genome browser
AA seq
955 aa
AA seq
DB search
MKNTEIVVQGARAHNLKNINVTIPRDQLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARIGKP
ICPNHGIEITSQTIEQMVDRLLTYPERTKMQLLAPMVSGRKGTHVKLLEDLKKQGFVRVR
IDGELRDLDDAIELDKNKKHSIEVVVDRVVMKEGIAARLSDSLETALRLADGRVLVDVME
HEELLFSEHHACPLCGFSIGELEPRMFSFNSPFGACPSCDGLGSTQEVDLDLVVPDWDRS
LLEHAIAPWEPTSSQYYPQLLKAVCDHYDIPMDVPVKDLPKEKMDKVLYGSGKDKIHFHY
ENEFGNVRDQMIEFEGVVRNVERRFKETTSDYVREQMEKYMAQQACPSCKGYRLKPETLA
VKVADKHIGEVTQYSIQEADTFFKELDLTEKDMQIARLVLREIEERLGFLVNVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLISTLQNMRDIGNT
LIVVEHDEDTMLAADYLIDVGPGAGVHGGQIVAAGTPQEVMKNEKSLTGQYLSGRKFIPL
PIERRQPNGRKLSIKGAKENNLRNVKVDVPLGLFVAVTGVSGSGKSTLINEILYKSLAQK
LNRSKVKPGEHKEVTGIDELEKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAATNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKD
KSIADILDMTIENAVVFFENIPKIQRKLQTIVDVGLGYMKLGQPATTLSGGEAQRVKLAS
ELHRRSTGKSFYILDEPTTGLHADDIARLLVVLQRLVENGDSVLVIEHNLDVIKTADYII
DLGPEGGDKGGTIVATGTPEEVVEVAGSYTGKYLKPILERDRMRMDALLAEATKS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatactgaaatcgtcgtgcaaggtgcacgtgctcataatttaaaaaatattaat
gtcacaattccacgtgaccaattagtcgttttaacaggattatcgggctctggaaagtct
tctctagcatttgacacaatttatgcggagggccagcgtcgttacgttgagtccctttcc
gcctatgcccgtcaatttcttggacaaatggataagccagatgtcgatgcgatagaaggt
ttatcgcctgctatttccattgaccaaaaaacgacaagtcgtaacccacgatctactgtc
ggtacggtaacggaaatctatgattacctacgtttactttatgcacgtattggtaaaccg
atttgtccaaatcatggcatagaaatcacttcccaaacgattgagcaaatggtggatcgt
ttattaacctatcctgagagaactaagatgcagctccttgcaccaatggtttctggacgt
aagggtacccatgttaaactgctagaagatttaaaaaagcagggttttgttcgtgtacga
attgatggggaattgcgtgatttagatgatgctatcgaacttgataaaaataaaaagcat
tccatcgaagtagtagtggaccgtgttgttatgaaggaagggattgctgctcgtctgagt
gattctttagaaacggctttacgcctggcagatggacgtgtgcttgtcgatgtgatggaa
catgaagagttactatttagtgagcatcatgcctgcccattatgtggtttttctattggt
gagttagagcctcgtatgttttcatttaatagtccgtttggtgcttgtccaagctgtgat
ggcttaggttcaacacaagaggtagatttagatttagtggtgcctgattgggatcgttct
ttgttagagcatgccatcgcaccatgggaaccaacaagttcgcagtactacccacaatta
ctaaaggctgtatgtgatcattacgatattccaatggacgtgcctgtgaaggatttgcca
aaggaaaagatggataaagttttatatggctctggaaaagacaagatacacttccattat
gaaaatgagtttggcaatgtgcgagatcagatgattgaatttgagggtgttgtgcgcaat
gttgagcgtcgttttaaagagacgacatccgattatgttcgtgagcagatggaaaaatac
atggcacagcaggcttgcccttcatgtaaagggtatcgtttaaagcctgagacgctagca
gtgaaagtagctgataaacatatcggtgaggtcacacaatattcaattcaggaagcagac
actttctttaaagagcttgatctcactgaaaaggatatgcaaattgctcgattagtttta
cgagaaatcgaagaacgattgggcttccttgtgaatgttggtttagactatttaacattg
agtcgtgcagcaggtacattatctggtggagaggcacaacgtattcgccttgctacacaa
attggttcacgattaacgggagtcctctatattttagatgagccttcgattggtttgcat
cagcgagataatgatcgactgattagcacattacaaaatatgcgtgacattggaaatacg
ctgattgtggtagagcatgatgaagatacgatgcttgctgcagattatctcatcgatgta
ggacctggagcaggcgtccatggcggtcaaattgtggcagcaggtacaccacaggaagtt
atgaaaaatgaaaaatccttaactggacaatatttaagtggtagaaagtttattccttta
ccaattgaaagacgccaaccaaatggtcgaaagctctccattaaaggtgccaaggaaaat
aatttacgcaatgttaaagtagatgttccattaggcttatttgtagcagtgacaggtgtg
tctggttcagggaaatctacactgataaatgaaattttatataaatctttggcacagaag
ctgaatcgttcaaaggttaagcctggcgagcataaagaagtgacaggtatcgatgagctt
gaaaaagtaatcgatattgatcaatcgccaattggtcgtacacctcgttcaaacccagca
acttatacaggtgtttttgatgatattcgcgatgttttcgcagcaacaaatgaagcaaag
gtacgaggctataaaaaaggacgctttagcttcaatgttaagggcggtcgctgtgaagca
tgtcgtggtgacggcattattaaaattgaaatgcatttccttccagatgtttatgtacca
tgtgaagtatgtcacggcaaacgttataaccgtgaaacacttgaagtgaagtataaagat
aagagtattgcagatattctcgatatgacaattgaaaatgcagtagtgttctttgaaaat
attccaaagatccagcgtaagctacaaacgattgttgatgtggggttgggttatatgaaa
ttagggcaaccagccacaaccttatcgggtggtgaggcgcagcgtgtaaaactagcctct
gaattacatcgacgctccacagggaaatccttctatattttagatgaacctacgacagga
ttacatgccgatgatattgctcgtttacttgtcgttttacagcgtcttgttgaaaacggt
gattcggtattagttattgagcataacttggatgtgattaaaacagctgattatatcatt
gacttaggtccagaaggcggagacaaaggtggtacgattgttgcaactggtacacctgaa
gaggtagtagaagtagcaggctcctatacaggcaaatacttaaaaccaattctggaacgt
gatcgtatgagaatggatgcattgctagcagaagctactaagtcttaa
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