Lysobacter sp. TY2-98: DWG18_06825
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Entry
DWG18_06825 CDS
T05586
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG18_06825 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_06825 (rnr)
03016 Transfer RNA biogenesis [BR:
lyt03016
]
DWG18_06825 (rnr)
Enzymes [BR:
lyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DWG18_06825 (rnr)
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWG18_06825 (rnr)
Transfer RNA biogenesis [BR:
lyt03016
]
Prokaryotic type
tRNA degradation factors
DWG18_06825 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AXK72021
UniProt:
A0A345ZJU6
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All DBs
Position
complement(1448614..1451055)
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AA seq
813 aa
AA seq
DB search
MKQKKSSRAGAGKGTGKGGPSAPTRGASSNKPAGKHGKPGGHGKHGSQRPAWMPEPPRPL
RGRGEAPTVDPHAHREAARYEKPIASREMILRLLASADGPLPIDVIAEQLGIDDDERREA
LNFRLRAMLRDGQLLQNRKGAYVPAEQVDLIPGVVIANPDGFGFLKPDPGHGDDLFLPPF
EMRRVMHGDRVLANVTSVDRRGRRQGAIAEILERRLTRLMGRYETRAGVGFVIPDDRRVQ
QDILIPPDARNDANPGQVVVCEITEMPDGKHVPVGRILTVLGDKLTASLAVQAAIHGHDI
PHEFPQPVLEEAASIPVDVDAATAATRVDLRKLSLVTIDGEDAKDFDDAVYAEPNRDGFR
LVVAIADVSHYVRPGTPLDEEAQKRATSVYFPGFVVPMLPETLSNGICSLKPKVDRLCFV
CDMQVDRKGQVTESKFYEAVMHSHARLTYTQVWNAIGDDVTDAEREDSRGIIGSLMPNIE
NLHQLFHILVKARERRGAIEFESSEVRFVIGPKGEVVQAGMLQRNDAHKLIEECMIAANV
EAAKFLIEADVPAPFRIHERPPEQKYEDLLEFLKEFNLSLPAWSKVKPKDFTALLKKIRE
RPEAALLESVLLRSQALAVYAPTNVGHFGLALDAYAHFTSPIRRYPDLLVHRAIKHALSG
AKPEKYRYSPSQMAQLSLESSERSRRADEAAREVDERYRAAWMEQHVGGEFDGTISGVTS
FGLFIELDESKVNGLVHVTQLPNDFYHFDPVRKTLTGERRGREYRLGDRVRIVVLKASVE
DRRIDFRLLEEGGGGLKPLPPRGQPAKRKKQAY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaagaaatcctcccgcgctggcgcgggcaagggcaccggcaagggcggcccg
tcggcacccacgcgcggtgcatcgtccaacaaacctgcgggcaagcacggcaaacccggc
ggccacgggaagcatggatcccagcggccagcctggatgcccgagccgccgcgtccactg
cggggccgcggcgaagcgccgacggtcgatccgcacgcgcaccgcgaggccgcgcgctac
gagaaaccgatcgccagccgcgaaatgatcctgcggctgctcgcgtcggccgacggtccg
ctgcccatcgacgtgatcgccgagcagctgggcatcgacgacgacgaacgccgcgaggcc
ctgaatttccgcctgcgcgcgatgctgcgcgacggccagttgctgcagaaccgcaagggc
gcctacgtccccgcggagcaggtcgacctgattccgggcgtcgtcatcgccaatcccgac
ggtttcggtttcctcaagcccgatccggggcatggcgatgacctgttcctgccgccgttc
gaaatgcgccgcgtcatgcacggcgatcgcgtgctggcgaacgtcaccagcgtcgaccgc
cgcggtcgtcgccagggcgcgatcgcggagatcctcgagcgtcgcctgacgcgcctgatg
ggccgctacgagacgcgcgcgggcgtcggcttcgtcatccccgacgaccgccgcgtgcag
caggacatcctgattccgccggacgcgcgcaacgatgcgaaccccggccaggtcgtcgtg
tgcgagatcaccgagatgccggacggcaagcacgtgccggtcggccgcatcctcaccgtg
ctcggcgacaagctcaccgcgtcgctggcggtgcaggcggcgatccacggtcacgacatt
ccgcacgaattcccgcagccggtgctggaggaggccgcgtcgattccggtcgatgtcgac
gccgccacggccgcgacacgtgtggacctgcgcaagctgtcactggtcaccatcgacggc
gaggacgctaaggatttcgacgacgccgtctacgccgaaccgaatcgagacgggttccgg
ctcgtcgtcgcgatcgccgatgtctcgcattacgtgcgtccgggcacgccgctcgacgag
gaggcgcagaagcgcgcgaccagcgtgtacttcccgggtttcgtcgtgccgatgctgccg
gagacgctatcgaacggcatctgctcgctcaagcccaaggttgatcgcctgtgcttcgtc
tgcgacatgcaggtggatcgcaaggggcaggtgacggaatcgaagttctacgaggcggtg
atgcattcgcatgcgcgcctcacgtacacgcaggtctggaacgcgatcggcgacgacgtc
accgacgcagagcgcgaggattcccgcggcatcattggttcgctgatgccgaatatcgag
aatctgcaccagctgttccacatcctcgtgaaggcacgcgaacgacgcggcgcgatcgag
ttcgaatccagcgaagtgcgcttcgtgatcggcccgaagggcgaggtcgtgcaggccggc
atgctccagcgcaacgacgcgcacaagctgatcgaggaatgcatgatcgcagcgaacgtc
gaggccgcgaagttcctgatcgaagccgatgtgcccgcgccgttccgcatccacgagcgc
ccaccggagcagaagtacgaagacctgctcgaattcctcaaggaattcaatctgagcctg
cccgcgtggtcgaaggtgaaacccaaggacttcaccgcactgctcaagaagatccgcgag
cgccccgaggctgcgctcctcgaatcggtgctgctgcgcagccaggcgctggcggtgtac
gcgccgaccaacgtcggtcacttcggcctcgcgctggacgcgtacgcccacttcacgtcg
ccgatccgccgctatcccgacctgctcgtgcatcgcgcgatcaagcacgcgttgagtggt
gcgaagccggagaagtacaggtattcaccgagccagatggcgcagctgtcgctggagagt
tccgagcgttcgcgacgcgccgacgaagccgcgcgcgaggtcgacgaacgctatcgcgcc
gcgtggatggaacagcacgtcggtggcgagttcgacggcacgatcagcggcgtgaccagc
ttcggtctcttcatcgaactcgacgagtcgaaggtcaacggcctggtgcacgtcacccag
ctgccgaacgacttctaccacttcgacccggtgcgcaagacgctgaccggcgagcgccgt
ggacgcgaataccgcctcggcgaccgggtgcggatcgtggtcctgaaggcgagtgtcgag
gatcgtcgcatcgacttccggctgctcgaggagggcggcggcgggttgaagccgttgccg
ccgcgtgggcagccggcgaagcggaagaagcaggcgtattga
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