Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_3886
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Entry
MMASJCM_3886 CDS
T03694
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mabl
Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mabl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMASJCM_3886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mabl03021
]
MMASJCM_3886
03400 DNA repair and recombination proteins [BR:
mabl03400
]
MMASJCM_3886
Enzymes [BR:
mabl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMASJCM_3886
Transcription machinery [BR:
mabl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMASJCM_3886
DNA repair and recombination proteins [BR:
mabl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMASJCM_3886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAP98662
LinkDB
All DBs
Position
complement(3884723..3888091)
Genome browser
AA seq
1122 aa
AA seq
DB search
MQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEV
KAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVV
VSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVT
VLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQAL
LENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQT
TMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAIT
PQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVR
DVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTA
DEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAM
IPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEV
SADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVVADGPCTENGEM
ALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDI
PNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVR
DTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKG
VIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIEGDPEWA
QNLPEDLQSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSG
EPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM
QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE
VLSKDGAAIEMRDGDDEDLERAAANLGINLSRNESASIEDFA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
gtgcagacggagtcctttgaatggctggttggatcgccgcgctggcgtgaggttgcgact
gcacgcggtgaggtgaacccgaccggcggccttgaggagatcctcacggagctttcgccg
atcgaagacttctccggctcgatgtcgctgtcgttcagcgacccgcgcttcgacgaggtc
aaggcgcccgtcgacgagtgcaaagacaaggacatgacgtacgcggccccgctgttcgtc
acggccgagttcatcaacaacaacaccggtgagatcaagagccagacggtcttcatgggt
gatttcccgatgatgaccgacatgggcaccttcatcatcaacggcaccgagcgcgtggtc
gtctcgcagctcgtccgttcgccgggtgtctacttcgacgagagcatcgacaagtcgacc
gagaagaccctgcacagcgtcaaggtcatccccggccgcggtgcctggctcgagttcgac
gtcgacaagcgcgacaccgtcggcgtccgcatcgaccgcaagcgccgtcagccggtcacc
gtgctgctgaaggcgctgggctggaccaacgagcagatcgtcgagcgcttcgggttctcc
gagatcatgatgggtaccctggagaaggacaacatcgccggtcccgacgaggcgttgctg
gacatctaccgcaagctgcgcccgggcgagccgccgaccaaggagtcggcgcaggccctg
ctggagaacctgttcttcaaggagaagcgttacgacctggcccgcgtgggtcggtacaag
gtgaacaagaagctgggcctgggcggcaccaatccggctcaggtgaccaccaccaccctc
accgaggaagatgtcgtcgccaccatcgagtatctggtgcgcctgcacgagggccagacc
acgatgaccgcccccggcggcgtcgaggtgccggtggacgtggacgacatcgaccacttc
ggtaaccgtcgcctgcgtaccgtcggcgagctgatccagaaccagatccgggtcggcctg
tcccgtatggaacgtgtcgtgcgcgagcgcatgaccacgcaggacgtcgaggcgatcacc
ccgcagaccctgatcaacatccgtcccgtggtggcggcgatcaaggagttcttcggaacc
agccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacccacaagcgt
cgtctgtcggcgctgggccccggtggtctgacccgtgaccgcgccggccttgaggtccgc
gacgtgcacccctcgcactacggtcgtatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctgtcggtgtatgcgcgggtcaacccgttcggcttcatcgag
acgccgtaccggaaggtctcggacggagttgtcaccgacgagatccactacctgaccgct
gacgaagaggaccgccacgtggtggcgcaggccaactcgcccgtggacgccaacggccgc
ttcaccgaggagaagatcctggtccgccgtaagggcggcgaggtggagttcgtctcggcg
accgaggtcgactacatggatgtctcgccgcgccagatggtgtcggtcgcgaccgccatg
attccgttcctcgagcacgacgacgccaaccgtgccctgatgggtgccaacatgcagcgc
caggcggttccgctggtgcgcagcgaggccccgctggtgggtaccggcatggagctgcgt
gccgccatcgacgccggagacgtcgtcgtcgcggagaaggctggcgtcatcgaagaggtg
tctgccgactacgtcaccgtgatggcagacgacggcacccgccagagctaccggttgcgc
aagttcgcccgttccaaccacggcacctgcgccaaccagaagcccatcgtggacgagggc
cagcgggtcgaggccggtcaggtcgtcgccgacggtccctgcaccgagaacggcgaaatg
gccctcggtaagaacctgctcgtggcagtcatgccgtgggaaggccacaactacgaggac
gccatcatcctgtccaaccgtctggtggaagaggacgtgctcacctcgattcacatcgaa
gagcacgaaatcgacgcgcgcgacaccaagctgggcgccgaggagatcacccgggacatc
ccgaacgtctccgatgaggtgctggcagacctcgacgagcggggcatcgtccgcatcggc
gccgaggtccgcgacggcgacatcctcgtcggcaaggtcaccccgaagggtgagaccgag
ctgacccccgaagagcgcctgctgcgcgccatcttcggtgagaaggcccgcgaggttcgc
gacacctccctgaaggtgccgcacggtgagtccggaaaggtcatcggcatccgcgtgttc
tcgcgtgatgacgacgacgatctgcctgccggcgtgaacgagctcgttcgcgtgtacgtg
gcgcagaagcgcaagatctccgacggtgacaagctggccggacgccacggcaacaagggc
gtcatcggcaagatcctgcccgtcgaggacatgccgttcctgcccgatggcaccccggtg
gacatcatcctgaacacccacggtgtgccacgtcgtatgaacatcggccagatcttggaa
acccacctcgggtggattgccaagaccggctggaacatcgagggtgatcccgagtgggcg
cagaacctgcccgaggacctgcagtcggctcccgccgacacccgcacggccaccccggtg
ttcgacggtgcccgcgaggaggagctgaccggactgctgtcctcgacgctgcccaaccgg
gacggcgaggtcatggtggacggtgacggcaaggcgcggttgttcgacggccgcagcggc
gagccgttcccgtacccggtgaccgtcggttacatgtacatcctgaagctgcaccacttg
gtcgacgacaagatccacgcgcgttcgaccggcccgtactcgatgatcacccagcagccg
ctcggtggtaaggcgcagttcggtggccagcggtttggtgagatggagtgctgggccatg
caggcctacggtgcggcgtacacgctgcaggagctgttgaccatcaagtccgacgacacc
gtcggtcgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatccccgagccgggt
atccccgaatcgttcaaggttctgctcaaggaactccagtcgttgtgcctcaacgtggag
gtgctgtccaaggacggcgccgccatcgagatgcgcgacggcgacgacgaggacctggag
cgcgctgccgcgaacctgggaatcaacctgtcccgcaatgaatctgcttcgatagaggac
ttcgcctaa
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