Methanosarcina acetivorans: MA_3956
Help
Entry
MA_3956 CDS
T00080
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mac
Methanosarcina acetivorans
Pathway
mac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MA_3956 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mac03019
]
MA_3956 (deaD)
03009 Ribosome biogenesis [BR:
mac03009
]
MA_3956 (deaD)
Enzymes [BR:
mac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MA_3956 (deaD)
Messenger RNA biogenesis [BR:
mac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MA_3956 (deaD)
Ribosome biogenesis [BR:
mac03009
]
Prokaryotic type
rRNA helicases
MA_3956 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
CMS1
P-loop_SecA
AAA_30
HAUS5
Motif
Other DBs
NCBI-ProteinID:
AAM07307
UniProt:
Q8TJ32
LinkDB
All DBs
Position
4849066..4850733
Genome browser
AA seq
555 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGYVQAIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRV
LKSGVDIVVGTPGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEVQENDKFEALSRIID
IEDEFYGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVKAELEETIKTEEYGDCLEMSERLLEEYPAEKILA
ALLKYTFKEKFDESMYTEISSPSSYVDRKGKTRLFIAMGKADGMSPEKLSYFIQEELGDS
ELKVRDAEIFPHFSFVTLPFAQAEALLEIFKNKRRGRKPFVELAQKSKGRSLKGSNNGRS
NGRPRNPSRPRNTKK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcgcttgggctctcggacagtacattgaaagccctc
aaaaagaaaggtttcgaagaaccaaccccgattcaggaaaaagtcatccctctttttttg
aaaggagaatctgatattataggacaggctcagacaggaacaggaaaaacaaccgctttc
ggagcccccattatagaaaaaatccctgaaaaatcaggatacgttcaggcaataatcctg
actcctacaagggaacttgcaattcaggtttcagaggagctcaactccataaaaggagac
aaaaagcttcacgtcgtgccgatttacggcgggcagtccatgacccagcagctccgcgta
ctgaagagcggagtggacattgtcgtagggacccccggaaggatcatcgatcacctcgaa
agaaagagcctggacctcgaacatatcgcgtatttcgtacttgacgaagctgacgaaatg
ctgaacatgggtttcattgacgatattaaggaaatcttaaaggcaacaggtcctgataaa
aggatgctcttcttttcagccacaatgccaaagccaattcttggaatcgtcaagaagtat
atgcagaactacgagcatgttacaattgagaaagaggagcttgcagcaaagctgaccgaa
cagatctatttcgaggttcaggaaaacgacaagtttgaagctctcagcagaatcatcgat
atcgaagacgaattctacgggctcgttttctgccggacaaagaccgacaccggccagctt
gcccagaaactcagcgacagaggctatgaagccgatgccctgcacggagacctctcccag
caggaaagggaaaaaatcctgaacaagttcaggaagcagaagataaacgttcttgtcgca
accgatgttgcagcaagaggtatcgatatcatggatctgacccatgttatcaactattcc
ctgccccaggaccctgagtcttacgtgcacaggataggaaggaccggaagggcaggcaaa
cagggaactgctatcacctttgttacatccaccgagttcaggcggctcacttacataaaa
aagacctcaaagtccgaaatgaagaaaggtcgcatccccgaaataaaagatgtaattaaa
gccaaaagggcgagagtaaaagccgaactcgaagagaccataaagacagaagaatacggg
gactgcctcgaaatgagtgaaaggctccttgaggaataccccgcagagaaaatcctggct
gcccttttgaaatacactttcaaagaaaagttcgacgaaagtatgtatacggagatttcc
agccccagctcctatgtcgacaggaaaggaaaaaccaggctcttcatagccatgggaaaa
gccgatggcatgagtccggaaaaactttcatactttattcaggaagaacttggagacagc
gaacttaaagtgagggatgcagagattttccctcacttctcctttgtaaccctgcccttt
gcccaggctgaagctctgctcgaaatctttaaaaacaaaagaagaggcagaaaacccttt
gtggaacttgcccagaaatcaaaaggaagaagcctaaaaggttctaacaacgggcgtagc
aacggcagaccaagaaatcccagcagaccaagaaatacgaaaaaataa
DBGET
integrated database retrieval system
