Marinobacter adhaerens: HP15_315
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Entry
HP15_315 CDS
T01922
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mad
Marinobacter adhaerens
Pathway
mad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HP15_315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mad03021
]
HP15_315
Transcription machinery [BR:
mad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HP15_315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Pes-10
TMP_3
YL1
Motif
Other DBs
NCBI-ProteinID:
ADP96079
UniProt:
E4PL37
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All DBs
Position
complement(311353..313200)
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AA seq
615 aa
AA seq
DB search
MSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEET
PDADTLLMTEGDSTADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRILENEGRISDIVTGFLDPDDAEPFMGE
DTTPESSDDSDSDSDDDDDSSEEETDNGPDPEETRLRFELLNEKLEAANKALAKHGRSDK
KTQEALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQICVRECKMPRKDFI
KSFPGNETNLDWADKIAKSKKPYAAPLAERIDEVVRLQKRIQNVQTEVDLDVADIKEINR
RVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
GERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREA
TRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SDHLRGFIDDQGNQG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcgcaaaaatcacgtttgaaagacctcattgcacgaggcaaggaacaa
ggttacctgacttacgccgaggtaaacgaccacctcccggaagacatcgccgatccggat
caggtcgaagacatcattcgcatgattaacgacatgggtattcaggtgtgcgaagaaaca
ccggacgccgataccctgctgatgaccgagggcgactccaccgctgacgaagccgccgcc
gctgaagccgctgccgctctggcagccgttgagaccgacgccggccgcactacggatcca
gtccgcatgtacatgcgcgaaatgggcaccgtcgagctgctgactcgcgagggcgaaatc
gtcattgccaagcgcatcgaggaaggcattcgcgatgtgatggccgccgtagcccacttc
ccgggcaccgctggcaccgttatccaggcctacgaccgcattctcgaaaacgaaggccgt
atcagcgacatcgtaaccggcttcctggatccggacgacgccgagccgttcatgggtgag
gacaccacacccgaaagctctgatgattccgactcggattcagacgatgacgacgactcc
tcggaagaagaaaccgataacggcccggatccggaagaaacccggctccggttcgaactg
ctcaacgaaaagctggaggccgccaacaaggccctggccaagcacggtcggtccgacaag
aagacccaggaagccctgaacgagctgggtcaggttttcgcaccgttcaaactcgccaac
aaggcctttgacgagctggtcaacgtggttcgctccaccaacgacctggttcgtgagaac
gagcgcgcgatcatgcagatttgtgttcgcgagtgcaaaatgccccgcaaggacttcatc
aagtcgttcccgggcaacgagaccaacctggattgggccgacaaaattgccaagagcaag
aagccttacgcagcgcccttggccgagcgtatcgacgaagtcgttcgcctgcagaagcgg
atccagaacgtacagactgaagtggatctggacgttgccgacatcaaggaaatcaaccgt
cgggtttccatcggtgaagccaaggcccgccgcgccaagaaagagatggttgaggccaac
ctgcgtctggttatttccattgccaagaaatacaccaatcgcggcctgcagttcctggac
ctgatccaggagggcaatatcggcctgatgaaggccgtcgacaagttcgagtaccgtcgg
ggctacaagttctcgacctacgccacctggtggattcgtcaggccatcacccgctctatt
gcggaccaggcccgcaccatccgtattccggtgcacatgatcgagaccatcaacaagctc
aaccgcatctcccgccagatgttgcaggagatgggtcgcgaacccacgccggaagaactg
ggcgagcgcatggaaatgcctgaggacaagatccgcaaggtattgaagatcgccaaagag
ccgatctccatggagactccgattggcgacgacgaagacagccatctgggcgacttcatc
gaagatatccaggccctctccccggtggattccgccaccgccgaaggtctgcgcgaagcc
acccgctcggtactggccggcctcaccgcccgcgagtccaaggttctccggatgcgcttc
ggtatcgagatgaacaccgaccacaccctggaagaagtcggcaaacagtttgacgttacc
cgtgagcggatccgtcagatcgaagccaaggccctgcgcaaactgcgccatccttcacgt
tccgatcacctgcgtggcttcatcgacgatcagggcaatcagggataa
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