Magnetospirillum sp. XM-1: XM1_4150
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Entry
XM1_4150 CDS
T04231
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM1_4150 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
magx03019
]
XM1_4150 (rne)
03009 Ribosome biogenesis [BR:
magx03009
]
XM1_4150 (rne)
Enzymes [BR:
magx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XM1_4150 (rne)
Messenger RNA biogenesis [BR:
magx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XM1_4150 (rne)
Ribosome biogenesis [BR:
magx03009
]
Prokaryotic type
rRNA processing factors
XM1_4150 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CUW41209
UniProt:
A0A0U5I5S3
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All DBs
Position
I:4132726..4135452
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AA seq
908 aa
AA seq
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MVKRMLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMREATNDRDEAEPIGEGHLAAEA
VAEQTDGTTVEDAPTPENGENGEAAERAPRKRQVETVGGDDDAENERRRARLLRNYKIQE
VIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDRRRL
KSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVYEEA
SLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFHRYQV
EAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAADEVA
RQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFGLLELSRQR
LRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVHVQPAIALYI
LNQKRSALAAIEERYEFEVFLEGDDSLIPPAFRMDKVKAEFRPDEPARAAISMDDAAHRP
PAEAEPEEAEDEDDEEEEAQPERSGRNRDERSRDERNEDGEDGEGRKRRRRRRRRRKPGD
DRPDQADGEGAPDADDQPQNEGEAAEAGEDDGEGEGEGEGEGHRTEGGDDDQPRKRRRGR
RGGRRRRRRDGEGEGEGAEGEAGAEEAAEAGAEAVTAEPAADQTVDVPAQAPAEAAPAAE
DAAPAEKPKRKRAPAKKKAEAPAEEAKPEAAAEDAAPAEKPKRKRAPAKKKAEVAVEAAA
EPVPPPVEEPAAPQPEPAPAVAETPVAETVVAETVVAETVVTTEPAAEPEPPAPAKPPRK
GWWNRLMS
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagcgtatgttgatcgacgccacccacccggaagagacccgggtcgtggtggtc
aatggaacccgcctggaagaactggatgttgagacatccaccaagcggcagctgaagggt
aacatctatctggccaaggtggtgagggtcgaaccctcgcttcaggctgccttcgtcgag
tacgggggcaaccgccacggcttcctggccttcagcgaaatccaccccgactacttccag
atcccggtggccgaccgccaggccctgctggccgcccagcgggccgaggtgatgcgcgaa
gccaccaacgaccgcgacgaggccgagcccatcggcgaaggccatctggccgccgaggcg
gtggccgagcagaccgacggcaccaccgtcgaggacgcccccacccccgaaaacggcgag
aacggcgaggccgccgaacgcgcgccgcgcaagcgccaggtggaaaccgtgggcggcgac
gacgacgccgagaacgagcgccgccgggcgcgcctgctgcgcaactacaagatccaggaa
gtaatcaagcgccgccagatcatgctggtgcaggtggtcaaggaagagcgcggcaacaag
ggcgcggctctcaccacctacctgtcgctggccggccgctattgcgtgctgatgcccaac
acggcgcggggcggcggggtgtcgcgcaagatcgtgtcggccaccgatcgccgccgcctc
aagtccatcgccaacgagatggacatcccggacggcatggcggtgatcatccgcaccgcc
gggtccgagcgctccaagaccgagatcaagcgcgactacgaatacctgctgcgcatgtgg
gacagcgtgcgcgagctgaccttgaagtccagcgcgcccgccctggtctatgaagaggcc
agcctgatcaagcgctcgatccgcgacctctattcccgcgacatcgacgaagtgctggtg
gacggcgacgagggctatcgcctcgccaaggactacatgcgcatgctgactccgtcgcat
gccaagaaggtccagccctacaaggacccggtgatgcccatgttccaccgctatcaggtg
gaagcccagctggacgccatgcattcgccggtggtccagctgaagtcgggcggctacatc
gtcatcagccagaccgaggcgctggtcgccatcgacgtcaactcgggccgcgccaccaag
gagcgccacatcgaggagacggcgctgaagaccaacatggaggccgccgacgaggtggcc
cgccagctgcgcctgcgcgacctggccggcctgatcgtcatcgacttcatcgacatggag
gagaaccgcaacaaccatgcggtcgagcgtcgcctcaaggaagccctgaagaacgatcgc
gcccgcatccaggtgggcaagatcagcgccttcggcctcctcgagctgtcgcgccagcgc
ctgcgcccctcgttgcaggaaaccaccttcagcccctgcccccattgcggcggcaccggc
ctggtgcgttcggtggaatcggcggccgtgcatatcctgcgcgccatcgaggaggagggc
atccgccgccgctcctccgaggtcaccgtgcatgtgcagccggccatcgcgctctacatc
ctcaaccagaagcgttcggcgctggccgccatcgaggagcgctacgagttcgaggtcttc
ctggagggcgacgacagcctgatcccgcccgccttccgcatggacaaggtcaaggccgag
ttccgccccgacgaaccggcccgcgccgccatctccatggatgacgccgcccaccgcccg
ccggccgaggccgagccggaggaggccgaggacgaggacgacgaggaagaggaagcccag
cccgagcgttcgggccggaaccgggacgagcgctcgcgcgacgagcgtaacgaggacggc
gaggacggcgagggccgcaagcgccgccgccgccgccgccgccgccgcaagcccggcgac
gaccgtccggaccaggccgacggcgaaggcgcgcccgacgccgacgaccagccccagaac
gaaggtgaagcggccgaagccggcgaagacgacggcgaaggcgagggcgagggcgagggc
gaaggccaccgcaccgagggcggtgacgacgatcagccgcgcaagcgccgccgtggccgc
cgcggtggccgccgccgccgccgccgtgacggcgagggcgagggcgagggcgccgagggc
gaagccggagccgaagaggccgccgaggccggagccgaggccgtgaccgccgagccggcc
gccgaccagaccgtcgacgtcccggcgcaagcgcccgccgaggccgctccggccgccgag
gacgccgcgccggccgagaagcccaagcgcaagcgcgccccggccaagaagaaggccgag
gcccccgccgaggaggccaagcccgaagccgccgccgaggacgccgctccggccgagaag
cccaagcgcaagcgcgccccggccaagaagaaggccgaggtcgccgtggaggccgccgcc
gaaccggtgcccccgccggtcgaggagcccgccgccccccagccggaacccgctccggcc
gtggccgagacgcccgtcgccgagaccgtcgtcgccgagaccgtcgtcgccgaaaccgtg
gtgacgacggaaccggcggccgagcccgagcccccggccccggccaagccgccgcgcaag
ggctggtggaaccggctgatgtcgtga
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