Micavibrio aeruginosavorus ARL-13: MICA_2143
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Entry
MICA_2143 CDS
T01630
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mai
Micavibrio aeruginosavorus ARL-13
Pathway
mai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MICA_2143 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mai03021
]
MICA_2143 (rpoB)
03400 DNA repair and recombination proteins [BR:
mai03400
]
MICA_2143 (rpoB)
Enzymes [BR:
mai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MICA_2143 (rpoB)
Transcription machinery [BR:
mai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MICA_2143 (rpoB)
DNA repair and recombination proteins [BR:
mai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MICA_2143 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DUF5887
Msg2_C
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
AEP10450
UniProt:
G2KQX2
LinkDB
All DBs
Position
complement(2150659..2155002)
Genome browser
AA seq
1447 aa
AA seq
DB search
MTAENTNSEKNSPKKIMAAKAKSTTKKAATTAPSKPPSLYRPPVVITRPADAVDSFTGRK
RIRRSFAKIREVAAMPNLIEIQRQSYEAFLQADVQPEDRKMQGLQEVFSTVFPIKDFADK
AEIDYVRYELEEPKYDTDECQQRGMTYAAPLRVTLRLSVFDIDETTGLRSIRDIKEQDVY
MVDMPLMTKNGTFIVNGTERVIVSQMHRSPGVFFDHDGGKTHASGKYLFAARVIPYRGSW
LDFEFDAKDLMYVRIDRRRKLPVTTLLRALDSSMTADYRAKCEENDQPVDPLMVQGMSNE
EILRTFYGVVTYSKEKKGWKTAFDGARMRGVKLDHDLIDAKTGKSVLDAGTKITARVIKQ
LEEKGLKDMLVEDAQLIGQYLAEDIFDAKTGQVIFEAGHEITEEELKAFDKSGVTDIPVL
AIDHVNVGPYVRNTLLADKCDTREEALIDIYRVMRPGEPPTVESAQALFDSLFFDAERYD
LSAVGRVKMNLRLNLDAEDTVRVLRKDDILAILKYLHGLKDGAGEIDDIDNLGNRRVRSV
GELMENQVRVGLLRMERAIRERMSSVDIDNYMPHDLINAKPVAVSVREFFGSSQLSQFMD
QTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLA
TFARVNQYGFIESPYRRVVDGKVTDEVVYMSAMEEAKYTIAQASTPLSKDGKFLDDLVSC
RQAGENLMATPDTINMIDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRSD
APLVGTGMEAAVARDSGAAVTARRSGIVVQVDATRVVIRATEMTRADEPTVDIYKLSKFQ
RSNQSTCITQKPLVKVGDQIKAGDIIADGPSTQFGELALGRNVLVAFMPWNGYNFEDSIL
LSERIVAEDIFTSIHIEEFEVMARDTKLGTEEITRDIPNVGEEALKHLDEAGIVHIGAEV
QAGDILVGKVTPKGESPMTPEEKLLRAIFGEKAADVKDTSLRVPPGVTGTIVEVRVFNRR
GVDKDARALSIERAEIEQLAKDRDDERSILEGGFYARLAEMLVGQTLAAAPKQLDLAKGS
KIKQSDLESISRGLWRQIGVENETRMEEIEAMSKTFDDAVDDLKARFESKVEKLQRGDEL
PPGVMKMVKVFIAVKRKMQPGDKMAGRHGNKGVVSRIVPAEDMPYTEDGQPVDIVLNPLG
VPSRMNVGQILETHLGWASANLGKQIGQLIDSFADRKAPSDGDVKKLKEHLKGVYGDKEY
DEKVTKLSDQHLVEMANNLRGGVPMATPVFDGAVEADIDALLAKAGLNTSGQVRLIDGRT
GEYFHRNVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LQAYGAAYTLQEMLTVKSDDVAGRSKVYEAIVRGEDNFEIGIPESFNVLVKELKALGLNV
DMKNSGT
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgaaaacaccaattccgaaaaaaattccccgaaaaaaatcatggccgctaaa
gccaaaagcacgacgaagaaagccgcaaccactgcgccgtccaaacccccatcactctat
cgcccgcctgtggtgattacccgcccggctgatgctgttgacagcttcacgggccggaag
cgtattcgtcgttcgttcgcgaaaatccgcgaagttgcggcgatgccgaacctgatcgaa
attcagcgccagtcttatgaggcgttcctgcaggctgacgtacagccggaagaccgcaaa
atgcagggtcttcaggaagtgttctcgaccgtgttcccgattaaagacttcgcggacaag
gctgagattgactatgtgcgttatgagctggaagagccgaaatacgacaccgacgaatgc
caacagcgcggcatgacctatgcggccccgctgcgcgtcacgttgcgcctgtctgtattc
gacattgatgaaaccacaggcctgcgctccatccgcgacattaaagaacaagatgtctac
atggtggacatgccgctgatgaccaaaaacgggacgttcatcgtgaacggcaccgagcgt
gtgatcgtttcccagatgcaccgttccccgggtgtgttctttgaccacgatggtggcaag
acgcacgcgtccggtaaatatctgttcgcggcccgcgtaattccgtaccgcggttcctgg
ctggacttcgaattcgatgcgaaagacttgatgtatgttcgtatcgaccgtcgtcgtaag
ctgccggtgaccacgctgctgcgcgcgctggattcctccatgacggcggattaccgcgcc
aagtgcgaagagaacgatcagccggttgatccgctgatggttcaggggatgagcaacgaa
gaaatcctgcgcaccttctatggtgttgtgacgtattcgaaagagaaaaaaggctggaaa
accgcatttgacggtgcccgtatgcgcggcgtcaagctggaccacgacctgatcgacgcc
aaaaccggcaaatcggttctggatgctggcacgaaaatcaccgcccgcgtgatcaagcag
ctggaggaaaaaggcctgaaagacatgctggtcgaagacgcccagctgatcggccaatat
ctggcggaagacatcttcgatgcgaaaaccggtcaggtgatcttcgaagctggtcatgaa
atcacggaagaagagctgaaagccttcgacaaatccggcgtaaccgatattccggttctg
gccatcgatcacgtcaacgtgggcccgtatgttcgcaacaccctgctggccgacaagtgc
gatacccgcgaagaagcgttgatcgatatttaccgcgtcatgcgcccgggtgagccgccg
acagttgaatcggcccaagccctgttcgacagcctgttcttcgacgccgagcgttatgat
ctgtcggctgttggtcgcgtgaagatgaacctgcgcctgaacctggatgcggaagacact
gttcgcgttctgcgcaaggatgacattctggcgatcctgaaatatctgcacggtctgaaa
gacggcgcaggcgaaatcgacgatatcgacaacctcggtaaccgtcgtgtgcgttccgtt
ggcgaattgatggaaaaccaggttcgcgttggtttgctgcgtatggaacgcgcaatccgc
gagcgtatgtcttctgtcgatatcgacaactacatgccgcacgatttgatcaacgccaaa
ccggttgcggtttcggtgcgtgaattcttcggttccagccagctgtcccagtttatggac
cagaccaacccgctgtccgaaattacgcacaaacgccgtctgtccgcgctgggccccggc
ggtctgacccgcgaacgcgctggctttgaagtgcgtgacgtacacccgacccactatggc
cgtatctgcccgattgaaacaccggaaggtccgaacatcggtttgatcaactccttggcc
acctttgcccgcgtgaaccagtacggattcattgaatccccgtaccgccgcgttgtggat
ggcaaagtgacggacgaagtcgtttacatgtccgccatggaagaagccaaatacaccatt
gcccaggccagcacaccgctgagcaaagacggcaagttcctggatgatctggtttcctgc
cgccaagccggtgaaaacttgatggcgacgccggatacgatcaacatgatcgacgtgtcc
ccgaaacagatcgtgtccgttgctgcggcgctgatcccgttcctggaaaacgacgacgcc
aaccgtgctctgatgggttcgaacatgcaacgccaggccgttccgctgctgcgctccgat
gcgccgctggttggtacgggtatggaggccgccgttgcgcgtgactccggcgctgctgta
acggcccgccgttccggtatcgtggttcaggttgacgcaacccgcgttgttatccgtgca
acggaaatgacccgcgcggacgagccgaccgtagacatctacaaactgtcgaagttccag
cgttccaaccagtcgacctgcattacgcagaagccgctggtgaaagttggcgaccagatc
aaggctggcgacattatcgctgacggtccgtcgacccagttcggtgaactggctctgggc
cgcaacgtgctggtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcttg
ctgtccgagcgtatcgttgccgaagacatcttcacctcgatccacatcgaggaatttgaa
gtgatggcccgcgatacgaaactgggcaccgaagaaatcacccgcgacattccgaacgtt
ggtgaagaagcgctgaaacacctggacgaagccggtattgtacacatcggtgccgaagtt
caggcgggcgacattctggttggtaaagtgacgccgaaaggtgaatcaccgatgacgccg
gaagaaaaattgctgcgcgcaatcttcggtgaaaaagcagccgacgtaaaagatacctcc
ctgcgtgtaccgccgggggtaacgggtacaatcgttgaagttcgcgtgttcaaccgtcgc
ggcgtcgataaagatgcccgcgcactgtcgatcgaacgggctgaaatcgaacaactggcc
aaagaccgtgacgacgaacgctccattctggaaggcggcttctatgcccgtcttgctgaa
atgctggttggtcaaacgttggccgctgcgccgaagcaactggacctggcgaaaggttcc
aagatcaagcaatccgatctggagtccatcagccgtggcctgtggcgtcaaattggcgtt
gaaaacgaaacccgcatggaagaaatcgaagccatgtcgaagaccttcgacgatgccgtc
gatgatctgaaggcccgtttcgaatccaaagttgaaaaactgcaacgcggtgacgaactg
cccccgggcgtgatgaagatggttaaagtctttatcgccgtgaagcgtaaaatgcagccg
ggtgacaaaatggccggtcgtcacgggaacaaaggtgtggtgtcccgcatcgttcctgcc
gaagacatgccgtacaccgaagatggtcagccggtcgatatcgtgctgaacccgctgggt
gttccgtcccgtatgaacgttggtcagatcctggaaacgcacttgggctgggcttcggcc
aacctgggtaaacagattggtcaactgatcgattccttcgcggaccgcaaggctccgtcc
gatggcgacgtgaagaagctgaaagagcatctgaagggcgtctacggcgacaaggaatat
gacgaaaaagtcaccaagctgagcgatcagcatctggtcgagatggcgaacaacctgcgc
ggtggcgtgccgatggcaacgccggtctttgacggcgcggttgaagccgacatcgacgcc
ttgctggcaaaagctggtctgaatacatcgggtcaggtgcgtttgatcgatggtcgtacg
ggtgaatatttccaccgtaatgtgaccgttggttacatctacatgctgaaactgcaccac
ttggtcgatgacaagatccacgcacgctccattggtccgtactccttggtcacgcagcag
ccgttgggtggtaaagcccagttcggtggccagcgtttcggggagatggaagtctgggcc
ctgcaagcatacggcgctgcctacaccttgcaggaaatgctgaccgtcaagtcggacgac
gtggctggccgttcgaaagtctacgaagcgattgttcgcggcgaagacaatttcgaaatc
ggtattccggaatccttcaacgttctggtgaaagaactgaaggctctgggtctgaacgtc
gacatgaaaaacagcggcacttaa
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