KEGG   Monopterus albus (swamp eel): 109959330Help
Entry
109959330         CDS       T05607                                 

Gene name
lig3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
malb  Monopterus albus (swamp eel)
Pathway
malb03410  Base excision repair
Module
malb_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:malb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109959330 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:malb03400]
    109959330 (lig3)
Enzymes [BR:malb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109959330 (lig3)
DNA repair and recombination proteins [BR:malb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109959330 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme Autophagy_N GP24_25
Motif
Other DBs
NCBI-GeneID: 109959330
NCBI-ProteinID: XP_020454233
LinkDB All DBs
Position
Unknown
AA seq 1013 aa AA seqDB search
MQRRLLLLAPNTICVGLHPLCTLVRCHQLLKVFRVLPVFSCFEHLLPPVRAFRFPTEISN
FSSASQFSHNFVQNYPHQHFLHHCFSTEPDMADQRFLVEYAKRGTAGCKKCKDKIQKGIV
RIGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKDLI
NKHISDLMAKVSSSPKKKVQAKLNTSAQLMAPPADTSVNAPRKFSGFTAAKASTSGSSGT
QSSSPAKASQGSTLSAQLCDPQHKDCLFREYRKLCATVSENNSYNTKTQIIEKFLKKGSG
GDKFHGDLYLTVKLLLPGVIKNVYNLNDKQIVKLFSRIFKCNQDAMVRDLDQGDVSETVR
LFFEESKSFLPAAKSLLTIQEVDACLTRLAQLTKEDEQQTELEDIAKKCTSNDLKCIIRL
IKHDLKMNAGAKHVLDAVDPNAYDAFRASRNLGDVIDRVLRNQQEASSGSGPRKLLTVEA
SLMTPVQPMLAEACKSVEYAMKKCPKGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLP
HKVAHFKDYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNGVSLMERPLCERRKLLQDNMVEVPNRILFSEMKHITRAGDLADMITRVIREGLE
GLVLKDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPDSKKWCTVTKCSGGYDDATLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRD
PEQAPIWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLRELYRISKEN
CDFQVTAGPSTSNDDKGSSGGDSGGNSPSSSSRGGGPPKKAGNSISPKPKVMKSQSRTPG
SETPSAKKVKKNENVHSNGQSKTKATSQLLEPRNDKTLLDIFSGVKLFLPVSVQDFDKLR
RYFVAYDGDLVPDYEATTATHTLAEPEDDSQAQRVTPGWIWECIRKRRVVPPC
NT seq 3042 nt NT seq  +upstreamnt  +downstreamnt
atgcagagacgtcttcttttgttagctcccaacactatctgtgtaggcctacaccctctt
tgcactcttgtcaggtgtcatcagctcttgaaagtgtttagggtcttgcctgtcttttca
tgctttgaacatctacttccacctgttcgtgcattcaggtttcccacggaaatctctaat
ttttcctcagcatcgcagttttcccataatttcgtccagaattatcctcaccagcatttc
ctgcatcattgtttttccactgagccagatatggcagatcagaggttccttgtggaatat
gccaaacgtggtactgcaggttgtaagaaatgcaaggacaaaattcagaagggcatagtg
cggatagggaagattgtgccaaaccctttcagtgagtctgcaggggagatgaaagagtgg
tatcatgttaagtgtatatttgagaagctggaaagggcaagagccaccacgaagaagatt
gaggacatcacagatctggagggctgggaggagctacaggatgaagacaaggatctcatt
aataagcacatttcagacctgatggccaaagtcagttcaagtccaaagaagaaagtgcag
gccaaattgaacacctctgctcagctgatggctcctcctgctgatacatctgtcaacgct
ccacgcaaattttcaggattcactgctgcgaaggccagcacctccggcagctcaggaaca
caatcctcttcccctgccaaagccagtcaaggcagcaccctctctgcacagctttgtgac
cctcagcataaggattgcctcttcagagaatatcgcaaactctgtgccacggtgtcagaa
aacaacagctacaataccaagacacagattattgagaagtttctcaagaagggctcaggt
ggagataaattccatggagatctttatctgacagtgaagcttctcttgccgggcgtcata
aaaaatgtctacaacctcaatgacaaacagatcgtaaaactcttcagtcgcatattcaaa
tgcaaccaggatgccatggtgcgggatctggatcagggtgatgtgtctgagacagtgagg
ttgttcttcgaggagagtaaatcatttcttccggctgccaagagtctcctgaccatccag
gaagtggacgcatgcttgacccgtcttgcccagctgaccaaggaggatgagcagcagact
gaactggaggatattgccaaaaaatgcaccagtaatgacctgaaatgcatcattcgactt
atcaaacatgatttgaagatgaatgctggtgcaaaacatgtcttggatgctgtggatccg
aacgcttacgatgccttcagggcctcacgtaatctgggtgatgtgattgatcgggtgttg
aggaatcagcaggaggcatccagtggttcaggacccaggaaactcctcactgttgaggca
tcactcatgacccccgttcagcctatgttggcagaagcatgtaaatctgtggagtacgcc
atgaagaaatgccccaaaggaatgtactctgagattaagtatgatggagaacgtgtgcag
gtccataagaacggagacaacttcagctacttcagtcgcagcctcaaaccagtgttgccc
cacaaggtggcccatttcaaagactacattcctcaggcttttcccggtggccacagtatg
atactggatgctgaagtcctcctaattgacacaaagaccagtaaaccactgccctttggg
accttgggagtacacaagaaagcagcctttcaagatgccaacgtgtgcctttttgttttc
gactgtatctacttcaatggcgtgagcctcatggagaggcctctgtgtgaacgcaggaag
ctcctgcaagacaacatggtggaagtccccaacaggattctgttttcagagatgaaacac
atcactagggcaggagacctagctgatatgataactcgtgtcatcagagagggactcgaa
ggcctggtactgaaagacataaaaggcacctatgaaccagggaagcgccactggttgaaa
gtgaagaaggactatttgaatgaaggcgcaatggcagacacagctgacctggtcgtgctg
ggggccttctatggaaaaggctcaaatgggggcatcatgtccagttttctaatgggctgt
tatgacccggactccaagaaatggtgcacagtcaccaagtgctccggaggctatgacgac
gccaccttggccaggctccagaaggagctggatgtgatcaaaatcagcaaggacccaagc
aaaatcccaggctggttgaaaatcatcaagaactattatccagatttcattatccgtgat
cctgagcaagcaccgatctgggagatcacaggcgctgagttttccaaatcagaaatgcac
accgctgatggcatctccatccgctttcctcgcatgactcgcatccgtgatgacaaggac
tggaagagcgccaccaacttgcaccagcttagggagctgtaccgcatttctaaggagaac
tgtgactttcaagtgacagctggaccatctacatccaatgatgataagggctcatcagga
ggggacagcggaggaaactccccatcgtcgtcatcccgtggaggtggtcctcccaagaag
gccggcaacagtatttcacccaaacccaaggtgatgaaatcccagtctcgtactcctgga
tcagaaacacctagtgccaagaaggtgaagaagaatgaaaatgttcacagcaatggacaa
agcaaaacaaaggcaacctctcaactgctggagccaaggaatgacaagacactgttggac
atcttcagtggggtgaagctcttcctgccggtctcagtacaggactttgacaaactgaga
cgctactttgtggcatatgatggagaccttgtaccagactatgaagctaccacggccaca
catactctggctgaacctgaagacgacagccaggcccagagagttacacctggctggatc
tgggaatgtatccgcaagaggcgtgttgttcctccctgttaa

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