Monopterus albus (swamp eel): 109962404 Help Entry 109962404         CDS       T05607                                  Definition (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism malb  Monopterus albus (swamp eel) Pathway malb04115   p53 signaling pathway malb04145   Phagosome malb04350   TGF-beta signaling pathway malb04510   Focal adhesion malb04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:malb00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109962404   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109962404  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109962404   09143 Cell growth and death    04115 p53 signaling pathway     109962404   09144 Cellular community - eukaryotes    04510 Focal adhesion     109962404  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:malb04131]     109962404   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:malb00536]     109962404    04990 Domain-containing proteins not elsewhere classified [BR:malb04990]     109962404 Membrane trafficking [BR:malb04131]  Endocytosis   Phagocytosis    Opsonins     109962404 Glycosaminoglycan binding proteins [BR:malb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109962404 Domain-containing proteins not elsewhere classified [BR:malb04990]  Thrombospondin domain-containing proteins   Thrombospondins    109962404 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_3 TSP_1 TSP1_spondin VWC EGF_3 EGF_CA TSP1_ADAMTS EGF cEGF Laminin_G_3 TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  109962404 NCBI-ProteinID:  XP_020459750 LinkDB All DBs Position Unknown AA seq 1017 aa AA seqDB search MKLTGIFLLLMLWTCESARVAESREDNSVFDLFELVRVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKLDGSGPVLEIVS NGKANTLDIVFSTENKQQVVSIEEAYLATGHWKNITLFVQEDRAQLYAGCEEVNAAELDA PIQSILTQETPTSAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTTETM ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELRGLGVVVKELSNELRQLTD ENKPINIHSGVCLHNGIVYKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANATVPDG ECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGTQQRGRSCDRINNNCEGTSVQARDCYL QECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQFGGKDCKGEGRQTETCL KSPCPINGNWGPWSPWDTCTLTCGGGVQTRKRLCNDPTPKYGGKECVGDAKDTQMCNKQT CPIDGCISNPCFAGAKCTSFPDGSWKCGKCPTGYTGNGIKCKDIDECKEVPDACFEFNGV HRCENTDPGYNCLPCPPRFSGPQPFGRGVEQAVANKQICTPRNPCIDGSHDCNKNARCIY LGHFVDPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNLPNSG QEDYDKDDTGDACDNDDDNDGITDDRDNCPFIYNPRQYDYDHDDVGDRCDNCPYNSNPDQ TDTDNNGEGDACAVDIDGDGIMNENDNCPYVYNVNQKDTDLDGVGDMCDNCPLEHNPDQV DSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGRGDACDYDDDNDGSWT LMVMAVEMLAKMTLTKTTCLTSMMCALKTSILVRQTSGSSRWFLWTPKAPPRLILTGLSD IRAKSWFRLSTATLALLLGTTSSMQWTSVGLSSSTQIGMMIMLALCLATSPAPGSML NT seq 3054 nt NT seq  +upstreamnt  +downstreamnt atgaagttgactgggatatttttgctattgatgctgtggacctgcgagagcgccagagtt gcagagagccgagaagacaatagcgtgtttgacttgtttgagctcgtcagagtccccaag aagaaccacggggtcaccctggtcaaaggagatgacccgtacagccccgcatacaagatc ctcaatccagacctcatcccgccggttccagagagcgcttttagggacctgatcgattcc atccatgccgagaggggattcctcctgctgctcaacttcaagcagttcaaacggacccgg ggaagcctcttgaccgtggagaaactggacggctctggacccgtgttagagatagtctcc aacggcaaggcgaacaccctggacatagttttctccaccgagaacaagcagcaggtggtt tccatcgaagaagcctatctggctacgggccactggaagaatatcacgttgttcgtgcag gaggatcgggcgcagctgtacgcgggatgcgaggaggtgaacgcagctgagttggatgcg cctatccagagcatcctgacgcaggagaccccaaccagcgcgcagctcaggattggcaag ggagccgtgaaggacaggttcatgggggtcctacagaacgtgcggtttgtgtttggaaca acactggatgccatcctccgcaacaaaggatgtcaaagttccatgaccactgaaaccatg atcctggagaacctcaatggctcctcggccatcagaacagagtacactggacataagact aaagacctgcagatggtctgtggattctcctgtgaggacctggtcagcatgtttaaggag ctgagaggccttggtgttgtggtgaaggagctgtccaatgaactccgccagctaacagat gagaacaagcctattaacattcacagtggcgtctgcctccacaatggcatcgtttacaag aacaaagatgagtggacggtcgatgactgcactgagtgcacgtgtcagaactctgctact gtgtgccggaagatctcctgtcccctgatcccctgtgctaatgccactgttcctgatgga gagtgctgcccacgctgtggaacaccgagcgactatgcagaggacggctggtcgccatgg tctgaatggacccattgttctgtgtcatgtgggcggggcacccagcagcgcgggcgctct tgcgaccgtatcaataacaactgcgagggtacctctgtgcaagcccgtgactgctacctc caggagtgtgacaagcgcttcaagcaggatggcaactggagccattggtcaccctggtct tcctgctcagtcacctgtggttccggtgtcatcactcgtatccgcctctgtaactctccc accccccagttcggaggcaaggactgcaagggagagggccgtcaaactgagacatgtcta aagtctccatgccccatcaatggcaactggggaccctggtcaccatgggatacatgtact ctcacctgtggaggtggtgtccagactcgtaaacgcctgtgcaatgaccccacaccaaaa tacggtggtaaagagtgtgttggagatgccaaagacactcagatgtgcaacaagcaaacc tgccccatcgacgggtgcatatctaacccctgttttgctggagccaagtgcaccagtttc cctgatggttcctggaagtgtggaaagtgcccgacaggctacacgggcaacggtatcaag tgtaaagatattgatgagtgcaaagaagtcccagatgcttgctttgagtttaatggtgtg caccgctgtgaaaatacagatcctggctacaactgtctgccctgccctcctcgcttctca ggaccccagccatttggcagaggtgtggagcaggctgttgcaaataaacagatatgtaca ccccgcaatccctgcattgatggaagccacgactgcaacaaaaatgcccgctgcatctac ctcggacactttgtcgatcccatgtatcgctgtgagtgcaagcccggttatgctggcaat ggtcatatctgtggagaggacacagatctggatggatggcccaatgctgacttggtgtgt gtggagaatgcaacctaccactgcaaaaaggacaactgccccaacctccccaattctggt caggaagattatgataaagacgacactggagatgcttgtgacaatgatgatgacaacgat ggcattactgatgacagagacaactgtccattcatctacaacccaagacagtatgactat gaccatgatgatgttggtgaccgctgtgacaactgcccctacaacagtaaccctgaccag acggacacagacaacaatggagagggagatgcctgtgctgtggacatcgacggagatggc ataatgaatgagaatgacaactgtccctatgtgtacaacgtcaaccagaaagacacagac ctggacggggtgggagacatgtgcgataactgccccctggaacataatcctgatcaggtt gattcagatgatgaccgtgtgggagacaagtgtgatagtaaccaagatattgatgaggat ggacaccagaacaacctggacaactgcccatacattcccaacgccaaccaggctgaccat gacaaggacggcagaggagacgcgtgtgactatgatgacgataatgacggtagctggact ctgatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaacgtgcctg acatctatgatgtgtgccctgaaaacttcgatattagtgagacagacttccggaagttcc agatggttcctttggaccccaaaggcacctcccagattgatcctaactgggttgtccgac atcagggcaaagagctggttcagactgtcaactgcgaccctggcattgctgttgggtacc acgagttcaatgcagtggacttcagtgggactttcttcatcaacacagatagggatgatg attatgctggctttgtgtttggctaccagtccagctccaggttctatgttgtga

Monopterus albus (swamp eel): 109967980 Help Entry 109967980         CDS       T05607                                  Gene name thbs1 Definition (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism malb  Monopterus albus (swamp eel) Pathway malb04115   p53 signaling pathway malb04145   Phagosome malb04350   TGF-beta signaling pathway malb04510   Focal adhesion malb04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:malb00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109967980 (thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109967980 (thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109967980 (thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     109967980 (thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     109967980 (thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:malb04131]     109967980 (thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:malb00536]     109967980 (thbs1)    04990 Domain-containing proteins not elsewhere classified [BR:malb04990]     109967980 (thbs1) Membrane trafficking [BR:malb04131]  Endocytosis   Phagocytosis    Opsonins     109967980 (thbs1) Glycosaminoglycan binding proteins [BR:malb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109967980 (thbs1) Domain-containing proteins not elsewhere classified [BR:malb04990]  Thrombospondin domain-containing proteins   Thrombospondins    109967980 (thbs1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_ADAMTS EGF_CA cEGF Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  109967980 NCBI-ProteinID:  XP_020469590 LinkDB All DBs Position Unknown AA seq 1170 aa AA seqDB search MMLCGIFLLLMVWNCKGTRLAESRDDDSVYDLFDLARVNKRHHGVSLVKGDDPYSPAYKI LNADLIPPVPDSSFRDLLDSIQAERGFLLLINMKQFKKTRGSLLTIEKNDGSGSLFEITS NGKANTLDVVYSTMNQQQVVSIEETDLATGHWKNITLFVQDDWVQLYVGCEEINVSEMDV PIHRVLSQEVADIARLRIGKGAVKDKFMGVLQNVRFVFGTTLQTLLRNKGCQSGAALTDV MTVDNPVNGSSPAIRTDYTGHKAKDLQSVCGFSCDDIASMFQELKGLGVVVKQLSNELRK VSVDSQLLINQMNIHSGVCIHNGIVHKDKDEWTVDGCTECTCQNSATMCRKISCPLIPCA NATVPDGECCPRCGTPSAYAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGTDCQGEG RQTKICHQLPCPIDGGWGPWSPWNTCTVTCAGGIQNRKRLCSDPVPKYGGKDCVGDATMS QVCNKQDCPIDGCLSNPCFPGTRCTSFPDGSFKCGKCPLGYTGNGITCKDIDECKEVPDA CHTHNGVHRCENTEPGYNCLQCPARFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCH KNANCIYLGVFSESMFRCQCKPGYAGDGRICGEDTDLDGWPNTDLLCIVNATYHCKKDNC PRLPNSGQEDHDKDGLGDECDNDDDNDGIPDDRDNCPREYNPAQYDADRDDVGDSCDNCV FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL EHNPDQIDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGXXXXXXX XXXXXXXXXXXXXSNPDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFAISETDFRRF QMVPLDPKGTSQFDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDRDD DYAGFVFGYQSSSRFYTVMWKQITQTYWSNTPTRAQGYAGLSIKVVNSTTGPGEHLRNAL WHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNIYD KTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgcggcatctttttgctgttgatggtctggaattgtaaaggcacgaggctg gcagagagtcgagatgatgacagtgtgtatgacttatttgatctggcccgagtgaacaag agacatcacggagtgagtttggtcaaaggcgacgatccctacagccctgcatacaaaatc ctgaatgcagacctgatcccccccgtccccgacagctccttcagggacctcctcgactcc atccaggctgagaggggcttcctcctcctgatcaacatgaagcaattcaagaaaaccaga ggcagccttttaactatcgagaagaatgacggatctggatccttgttcgagatcacttcc aatggcaaggcgaacactctggatgttgtgtactccaccatgaaccagcagcaggtcgtg tccatcgaggagacggatctggccactggacactggaagaacatcacactgtttgttcag gatgactgggtgcagctttatgtcggctgtgaggagatcaatgtttcggagatggacgtg cccattcatagagtgctgtcccaggaggtggcagacattgccaggctcaggattggaaag ggagctgtgaaggacaaattcatgggcgtgcttcagaatgtgcgctttgtctttgggacc actctgcagactctactgagaaataaaggatgccaaagtggagctgccttaactgatgtc atgacagtggacaacccagtcaatggctccagccctgccattaggactgattacaccggc cacaaagccaaagatctgcagtctgtctgtggcttctcctgtgacgacatcgccagcatg tttcaggagctcaagggactcggtgtagttgttaaacagctgtcaaatgagctccgcaaa gtgtctgtggacagccaactgctgataaatcaaatgaacatccacagcggagtttgcatc cacaacggcatcgtgcacaaagacaaggatgaatggactgtggatggctgcaccgaatgc acctgccagaactcagctactatgtgtcgcaaaatctcctgccctctgatcccatgtgct aacgccacagtgcctgacggagagtgctgccctcgctgtggaacaccaagtgcctatgca gaggatggttggtccccctggtctgaatggacccattgttcagtcacttgtggtcgtgga atccaacagcgtggacgctcctgtgaccgcatcaacagcaactgtgagggcacctctgtg cagacccgtgactgttatccccaggaatgcgacaaacgcttcaaacaggatggtggttgg agccactggtctccctggtcttcgtgctctgtgacctgtggtgagggggtcatcacccga atccgcctctgcaactcccccacaccccagatgggtggcacagactgtcagggagaagga cgtcaaaccaaaatttgccaccagttgccttgtcctatcgatggaggttggggaccttgg tcaccttggaacacctgcactgttacctgtgctggaggaatccagaaccgcaaacgtctc tgctctgaccctgtgcccaaatatggaggaaaggattgtgttggtgatgccaccatgtct caagtgtgcaacaaacaggattgccctattgatggttgtctctccaatccatgcttccct ggcactaggtgtaccagcttccctgatggctccttcaagtgtggcaagtgtccacttggc tacactgggaatggtatcacctgcaaggacattgatgagtgcaaagaggtccctgatgct tgccacactcataacggagtccatcgctgtgagaacactgagcctggttacaactgcctg caatgccctgcacgtttttccgggccccagccctttggaagaggagtggaacaggcaact gctaagaaacaggtttgcaagccccgtaacccttgccaggacggcagccatgactgccat aaaaatgcaaactgcatctacttgggtgtcttctccgagtccatgttccgctgtcagtgc aagccagggtatgccggagatggccgtatttgtggagaggacactgacctggacggatgg cccaacactgacctgctctgcattgtgaatgcgacctaccactgcaagaaggataactgc cccaggcttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgt gacaatgatgatgacaatgatgggatcccagatgacagggacaactgccccagagagtat aatcctgcccagtatgatgcagacagggatgatgtaggcgacagctgtgacaactgtgtg tttgaggctaacactgaccaaacagacactgacaacaatggagagggtgatgcctgtgct gttgacattgatggtgatggcattttgaacgaaaacgacaattgtccatatgtttacaat gtggaccagagagataccgacagggacggagtgggagaccactgcgataactgccctctg gagcacaacccagatcagattgactctgactcagatctcgtaggagacaagtgcgacaac aaccaggacattgacgaggatggtcaccagaacaacttggacaactgcccctacatcccc aatgccaaccaagcagaccatgacaaagatggcaagggtnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcaaaccctgatcagttggac tctgatggtgatggccgtggtgatgcgtgcaaagacgattttgaccaagacaatgtgctt gacatctatgacgtgtgcccagagaattttgccattagcgaaacagacttccgcagattc cagatggttcctctggaccccaagggcacctcccagtttgatcccaactgggtggttcgg catcagggcaaggagctggtgcagactgtcaattgtgatcctgggattgctgtcggttat gatgagttcagtgctgtggacttcagtggaacattcttcatcaacacagacagagatgat gactatgctgggtttgtgtttggctatcagtccagctcacgcttttacacagtgatgtgg aaacagatcacacagacctactggtcgaacacaccaacaagagctcaaggctacgctggc ctgtcaataaaagtggtcaactccaccactgggcctggtgagcatttgaggaacgccttg tggcatactggagataccccaggacaggtccgcacactgtggcatgacccaaaaaacatt ggctggaaggatttcactgcctacaggtggcatctgacccacagacccaagactggactt attagagttgtaatgtatgaaggcaaaagaatcatggctgattctggaaacatctatgac aagacatatgccggtgggcgactaggcttgtatgtgttctctcaagagatggtgtacttc tcagacctcaaatatgaatgcagagatacataa

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